K20834

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20834

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20834

Determination of introduced cDNA(s)

  • J023091N11 - Rice Full-length cDNAs - Original: J023091N11

    full reading [+] show sequence

    Nucleotide sequence: J023091N11 - full reading 
    TGGGAGAACA GAACAAAGGT GGAGACTGCG ATTCACTTCC ACTCCCTTCC 
    CCACTGCCTT CCTCCTCTCA CTCTCACTCC CCCTGCGACC GCCGCCGAGA 
    GGCCATGGCG GAGCAAGCTC CACTGGCGCC GATGCCTCGA GTCAAGCTCG 
    GCACCCGGGG CCTAGAGGTG TCCAAGCTGG GGTTCGGGTG CATGGGGCTC 
    ACGGGCGCGT ACAACTCGCC GCTCGACGAC GACGCCGGCG CCGCCGTCAT 
    CGCGCACGCC TTCCGCCGCG GCGTCACCTT CTTCGGCACC TCCGACGTCT 
    ACGGCCCCCT CGCCAACGAG ATCCTCCTCG GCAAGGCGCT GAAGCAGCTG 
    CCGCGGGAGC AGGTGCAGGT GGCCACCAAG TTCGGGATTC GGCGGGGCGC 
    CGACGGCGTG CGCGCCGTGT GCGGCCGGCC GGAGTACGTG CGCGCCTGCT 
    GCGAGGCCAG CCTCGGCCGC CTCGGCGTCG ACTACATCGA CCTCTACTAC 
    CAGCACCGCG TCGACACCAC CATCCCCATC GAGGACACGA TTGGTGAGCT 
    CAAGAAATTG GTGGAGGAGG GGAAGGTGAG GTACATTGGG CTATCGGAGG 
    CGAGCCCTGA CACCATCAGG CGAGCTCATG CCGTGCACCC AATCACTGCA 
    GTTCAGATGG AGTGGTCTCT CTGGGCTCGT GACATTGAAC CCGAAATTGT 
    GCCGCTCTGC AGGGAGTTGG GCATTGGAAT TGTTCCCTAC AGCCCTATCG 
    CCCGCGGGTT TTTCGGAGGG AGAGGAGTGA CAGAACAATT GTCTGCTGAA 
    TCTAATTTGC AAGGACATCC ACGATTTTCT GCTGAAAATT TGGAGAAGAA 
    TAAACAGCTT TATCTGAAAA CGGAAGAGCT GGCCAAGAAG CACCAGTGCA 
    GCCCTGCTCA GCTAGCTTTA GCTTGGGTTC TTCATCAAGG GGATGATGTG 
    GTCCCAATAC CAGGAACAAC CAAGATAAAA AACCTAGATG CCAACATTGA 
    CTCCTTAAAG GTGAACCTCA CGGATGATGA CCTGAAAGAG ATCTCTAGCC 
    AGGTACGCGA AGAAGATGTC GCTGGTGGAA GACAGTATAC CTCATTTGCA 
    CATTACACCT GGAAGTATGC TGACACGCCA AAGAAGTAAA GCTAAAAAAA 
    TATTAGTATA TCAAAGATAT TGCCTGATTG CTATTCTCCC TGCGTATGTG 
    CTGGATGGTG TTAAATGTAT GCCTTGTGAA TGCTCTCTGC GGTTCTAATA 
    ATGTACTGCC AATAACAAAT TACTGCACTT CCACTCGCCT TTGAGAGCTT 
    CACGAAACAT ATAAAACTTG CTTAAGC

    Gene models with high sequence identity

    1. AT1G60690.1 [+] show detail - NAD(P)-linked oxidoreductase superfamily protein
      E-value: 2e-106; Score: 382.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Aldo/keto reductase 2.5e-75
    HMMPanther ALDO/KETO REDUCTASE 1.7e-109
    HMMPanther Aldo/keto reductase 1.7e-109
    Gene3D Aldo/keto reductase 5.6e-94
    superfamily Aldo/keto reductase 1.2e-102

    See the detailed result >

    AT1G60690.1

    Model type
    Protein coding
    Short Description
    NAD(P)-linked oxidoreductase superfamily protein
    Computational Description
    NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G60710.1); Has 30326 Blast hits to 30300 proteins in 2568 species: Archae - 659; Bacteria - 20203; Metazoa - 1608; Fungi - 2287; Plants - 1265; Viruses - 0; Other Eukaryotes - 4304 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR