K20838

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20838

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20838

Determination of introduced cDNA(s)

  • J033039N02 - Rice Full-length cDNAs - Original: J033039N02

    full reading [+] show sequence

    Nucleotide sequence: J033039N02 - full reading 
    GACTCCCCTC TCCTCCCGCC TCGCCGCCGC AACCACCGCC GCCTCGCCGC 
    AGCATCACCC GCAGCCGCCG CCGCCGCCGC CATGGACTCC GTCGCGTCGT 
    GGGGGCTGAC CCCGCTCGCC GCGGCCGACC CGCTCGTCCA CGACCTCCTC 
    GAGCGGGAGA AGCGGCGGCA GCGGAGCGGC ATCGAGCTCA TCGCCTCGGA 
    GAACTTCACC TCCTTCGCCG TCATGGAGGC CCTCGGCTCC GCGCTCACCA 
    ACAAGTACTC CGAGGGGATG CCCGGGGCGC GCTACTACGG CGGGAACGAC 
    GTCATCGACG AGATCGAGAA CCTGTGCCGC GACCGCGCCC TCGCCGCGTT 
    CCGCCTCGAC GCCGCGTCGT GGGGCGTCAA CGTGCAGCCC TACTCCGGCT 
    CGCCGGCCAA CTTCGCCGCC TACACGGCGC TCCTCAACCC GCACGACCGC 
    ATCATGGGGC TCGACCTCCC CTCCGGTGGC CACCTCACCC ATGGCTACTA 
    CACCGCGGGC GGGAAGAAGA TCTCCGCGAC GTCGATCTAC TTCGAGAGCC 
    TCCCCTACAA GGTGAGCGCC GCCACGGGGT ACATCGACTA CGAGAAGCTG 
    GAGGAGAAGG CGCTCGACTT CCGCCCCAAG CTCATCATCT GCGGCGGCAG 
    CGCGTACCCG AGGGACTGGG ACTACGCCAA GCTCAGGGCC GTCGCCGACA 
    AGGTCGGGGC GCTGCTCCTC TGCGACATGG CGCACATCAG CGGCCTCGTC 
    GCCGCGCAGG AAGCTGCAAA TCCTTTTGAG TACTGTGATG TGGTTACCAC 
    CACCACGCAC AAGTCCCTCC GAGGACCAAG AGCTGGCATG ATCTTCTACA 
    GGAAGGGCCC TAAGCCTCCC AAGAAGGGCC AGCCTGAGGG TGCTGTCTAT 
    GACTACGAGG ACAAGATCAA CTTCGCAGTG TTCCCGTCAC TGCAAGGTGG 
    TCCTCACAAC CACCAGATTG CAGCCCTTGC TGTTGCTCTG CAGCAAACCA 
    TGACACCTGG ATTCAAGGCC TACGCAAAGC AGGTCAAGGC CAACGCTGTC 
    GCCATTGGCA AGTATCTTAT GAGCAAGGGC TACAAAATGG TGACTGATGG 
    AACTGAGAAC CACCTTGTTC TCTGGGATCT TCGCCCTCTT GGCTTGACTG 
    GCAACAAGGT TGAGAAGATG TGTGACCTTT GCAGCATTAC ACTTAACAAG 
    AATGCTGTCT TTGGTGACAG CAGTGCATTG GCTCCTGGCG GTGTCCGCAT 
    TGGTACTCCT GCGATGACAT CCAGGGGTCT TGTCGAGAAG GACTTTGAGC 
    AGATCGGCGA GTTCCTCCAC CAGGCCGTGA CCATCTGCCT CAACATCCAG 
    AAGGAGCACG GCAAGCTCCT CAAGGACTTC TCCAAGGGCC TGGTGAACAA 
    CAAGGACATC GAGAACCTCA AGCTGGAGGT CGAGAAGTTC GCCACCTCCT 
    TCGACATGCC CGGCTTCACC CTCGACAGCA TGAAGTACAA GGAGTAGGAA 
    AACAAAAACA CACAAACCAT GGTCCTACCG CCGCTAATCG TCGACCAGCT 
    GTGCTCTCGT GGACCGCCGT CGTCGTCATC TTCTTCCTCG GCACAAGCTG 
    GCCCTGTGTT ACGGATTTTG TCTGCCCATC GAGATGATAG GTTTCATAAA 
    ACGCTCTCTC CCCCACCCTG CTGCTGCCTC TGGTTTGGTT GCCAACCTCA 
    TCCCCCATCG GTTTTTTTCC TCCTCTTGTT TCTAATTTCT AGGAGCTGTG 
    CCTTTTGGAA TCATGGAATG TCAAGTATTT GCCAATAATC AATCCGTTTG 
    ATTTCTGCCT ACCTTGTGTT TTCTGTGGGA TTGCTAAACT ATCAAACTGT 
    GCGAAGCTAC GAAAAAAAGA AATGCTGGAA TTTTTCAGAG TTGGGT

    Gene models with high sequence identity

    1. AT4G13930.1 [+] show detail - serine hydroxymethyltransferase 4
      E-value: 0; Score: 785.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Serine hydroxymethyltransferase, pyridoxal phosphate binding site 0
    HMMPIR Serine hydroxymethyltransferase 3.5e-243
    HMMPfam Serine hydroxymethyltransferase 3.2e-183
    superfamily Pyridoxal phosphate-dependent transferase, major domain 2e-175
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 3.9e-102
    HMMPanther Serine hydroxymethyltransferase 0

    See the detailed result >

    AT4G13930.1

    Model type
    Protein coding
    Short Description
    serine hydroxymethyltransferase 4
    Curator Summary
    Encodes a serine hydroxymethyltransferase maximally expressed in root
    Computational Description
    serine hydroxymethyltransferase 4 (SHM4); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process; LOCATED IN: cytosol, plasma membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT4G13890.1); Has 11689 Blast hits to 11661 proteins in 2862 species: Archae - 259; Bacteria - 6437; Metazoa - 341; Fungi - 289; Plants - 375; Viruses - 6; Other Eukaryotes - 3982 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR