K20840

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20840

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20840

Determination of introduced cDNA(s)

  • J013152N11 - Rice Full-length cDNAs - Original: J013152N11

    full reading [+] show sequence

    Nucleotide sequence: J013152N11 - full reading 
    GCCCCCTCCA CTGATTCCGC CCTTCCTCCA ATGGCCGCCG CCTCCTCCTC 
    TGCCGCCGCC TGCTTCCTCT CCCCGTCCCC TCCTCCCCGC CCGCGCCACC 
    ATTCCATCAA ACACCTCGCG TGCGCCGCCT CCAGGTCGCC GTCGCCGGGG 
    CCCTCCTCCT CCCGCTCCCT CGCCCTCCCT TCGCCTTCGG CTTCGGCTTC 
    TCCGTGGCCG TGGCCGCGGC GGCTCCGCGA CCTGCTCCCC GACGAGACCG 
    GCCGGATCCT GTCGTCCGCC ACGGGCTCCC TCATCGTCGC CCTCGCCTCG 
    GCCGCGCTGA TCCTCGGCGA CGCCGGCTCC GCCTCCGCGT TCGTCGTCGC 
    CACGCCGCGG AAGCTGCAGG CCGACGAGCT CGCCACCGTG CGCCTCTTCC 
    AGGAGAACAC GCCCTCCGTC GTCTACATTA CCAACCTCGC CGTGAGGCAG 
    GATGCCTTCA CGCTGGACGT GCTCGAGGTG CCGCAGGGGT CCGGGTCGGG 
    GTTCGTCTGG GACAAGAGCG GCCACATAGT CACCAATTTC CATGTCATCC 
    GTGGCGCGTC AGATCTCAGG GTCACACTTG CTGATCAGAC AGTGTATGAA 
    GCGCAAGTTG TTGGATTTGA CCAGGATAAG GATGTTGCTG TTTTGCGTAT 
    TAAAGCACCA ACAGATAAAT TAAGACCTGT ACCAGTTGGT GTGTCGGCAG 
    ACTTACTGGT CGGTCAGAAA GTATTTGCCA TAGGGAACCC GTTTGGTCTT 
    GACCACACTC TTACTACAGG AGTCATCAGT GGATTGCGTA GAGAAATCAG 
    TTCAGCTGCA ACAGGACGCC CTATACAGGA TGTGATACAA ACTGATGCTG 
    CTATCAATCC TGGTAACAGT GGTGGGCCAC TTCTTGATAG CTCAGGAAAC 
    TTGATAGGTG TAAACACTGC TATATACTCA CCTTCAGGAG CATCATCCGG 
    TGTTGGCTTT TCCATTCCAG TTGATACAGT TGGTGGTATT GTGGATCAGC 
    TTATAAAGTT TGGTAAAGTA ACAAGACCTA TTCTAGGGAT AAAATTTGCT 
    CCAGATCAAT CTGTAGAGCA GCTTGGATTA AGTGGAGTGC TTGTCTTGGA 
    TGCTCCTCCA AATGGACCAG CAGGCAAAGC GGGTCTGCAA TCGACCAAGC 
    GGGATTCCTA TGGTCGGCTT ATCCTAGGGG ACATAATTAC TTCTGTGAAT 
    GGAACAAAGG TAACAAATGG AAGCGACTTG TATAGGATTC TGGATCAGTG 
    TAAAGTTGGA GAGAAGGTGA CTGTGGAAGT ATTGCGTGGA GATCAAAAGG 
    AGAAGATACC CGTGATTCTT GAACCAAAGC CAGATGAATC ATAATAGTAA 
    GCCACCTCCA TAGGATCCAC TCTACTGTTT GTATGTCCAC ATAGATGCAG 
    AAATGGAATA TATACAAGAA ATTAGCATTT TCCCCTACCA CGGAATTCGC 
    TGTACATAAT TCATGCTTGT AAATTTTCTG GCAAAAAGAG AAAATCCAAT 
    TTGGCTTATT TCCTTGTC

    Gene models with high sequence identity

    1. AT3G27925.1 [+] show detail - DegP protease 1
      E-value: 2e-177; Score: 619.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Serine/cysteine peptidase, trypsin-like 3.3e-66
    superfamily PDZ/DHR/GLGF 1.4e-19
    Gene3D no description 1.1e-22
    Gene3D no description 4e-36
    Gene3D no description 4.7e-05
    ProfileScan PDZ/DHR/GLGF 11.622
    FPrintScan Peptidase S1C, HrtA/DegP2/Q/S 2.9e-47
    FPrintScan Peptidase S1C, HrtA/DegP2/Q/S 2.9e-47
    FPrintScan Peptidase S1C, HrtA/DegP2/Q/S 2.9e-47
    FPrintScan Peptidase S1C, HrtA/DegP2/Q/S 2.9e-47
    FPrintScan Peptidase S1C, HrtA/DegP2/Q/S 2.9e-47
    FPrintScan Peptidase S1C, HrtA/DegP2/Q/S 2.9e-47
    HMMSmart PDZ/DHR/GLGF 1.6e-10
    HMMPanther SERINE PROTEASE DO/HTRA-RELATED 2.3e-137
    HMMPanther SERINE PROTEASE FAMILY S1C HTRA-RELATED 2.3e-137
    HMMPfam Peptidase S1/S6, chymotrypsin/Hap 1.2e-15

    See the detailed result >

    AT3G27925.1

    Model type
    Protein coding
    Short Description
    DegP protease 1
    Curator Summary
    Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition.
    Computational Description
    DegP protease 1 (DEGP1); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis, protein catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: Trypsin family protein with PDZ domain (TAIR:AT5G39830.1); Has 16838 Blast hits to 16778 proteins in 2643 species: Archae - 108; Bacteria - 11023; Metazoa - 354; Fungi - 149; Plants - 421; Viruses - 7; Other Eukaryotes - 4776 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR