K20909

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20909

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20909

Determination of introduced cDNA(s)

  • J033040L19 - Rice Full-length cDNAs - Original: J033040L19

    full reading [+] show sequence

    Nucleotide sequence: J033040L19 - full reading 
    GACACTTCCC TCATCTCTCT CTCTCCCTCT CCCTCTCCTC CTCGGCGCGG 
    CTCGGCGGCG CTCCCCTCGC CTGCGCGGCC GCGCAGCGGT AGGGCGGAGG 
    CGCCGGCGGT GGCTCAGCCG ACGGACACCG TGGGTTGGCC CTCTACGACG 
    CCATCAGCCC GGCTCACCAG CCTCCGCTGA CCTCTACCGC TCCACAGACC 
    ACAGCAAGGC AGCAAGAGTG ATTGGCACTT TTCAATGGCA TGTGCTTCAA 
    AGACAATCTC TATTGGTTTT GCCAACAGTG GTCTATATGG AGAGGCAAGG 
    CTACTGTCGC CAAGCTACAA AAACTACCCA AGGAGATCCT CTTACAAATT 
    TATCAAAGTT CGTGCAGTAC AGGGAAATGA TGGTCGTCGA AGGCTAGTTG 
    ATATAATCCG AACCATCCCT GAACTCTCTA GAAACTATTT CAGAAGCCGG 
    TCAAGGAGAG CTCTTTTTGG TGGTATCTCA CTTCTGGGAG GCTTTTATGT 
    GGCGCAGACA ATATCTCTGT CTTTCGGAGC GTTGGGTGTG AACGATGTCA 
    TAGCAGCAGT TGTGTGTGTC CTGCTTACTG AATACGTAAC TAAGTTCTAC 
    TACAGCCGGC CTAAGGTTAC CTTCCCATTT GCTCTCCTCA ACAACTTCAA 
    GATGGGTTTC ACATATGGCC TGTTTATTGA TGCCTTCAAG CTTGCTAGCT 
    GACCTGCAAT TCTTCCTATT GGTGCTTTGA CATGTTATGT TCTTGAATCT 
    TGAAAAACAG CAAAGATGGT GAAAAAATAG CATGCCCCCA CGATGTTATT 
    ACTGAGACGA GGGATCTATA GTTCTGTGGC TTTCCTCAGC TTTGTTCTCC 
    TATGTGAAGG CAGGCTTGTT GCTGGTATAG TTTTTGAGTT GGTGGATAGA 
    TTTTCAAAGA TTGGTCCACA TGTGGGTATA CTGTAGTGTG ATGATAACAA 
    CTATTTATTT TGAGATTCAG ATTACATATG ATTGAAGCCC GGTGTGTACA 
    TATGCAAATT TCAAGCTATC TGATCTTGAT CATCTCAAAA AGGCTGTCTA 
    ATTTTTAATG GAACTTGGTT CAGATTTAAG TCC

    Gene models with high sequence identity

    1. AT5G43050.1 [+] show detail - Protein of unknown function (DUF565)
      E-value: 2e-48; Score: 189.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G43050.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF565)
    Curator Summary
    Chloroplast localized YCF20-like gene involved in nonphotochemical quenching. Has overlapping functions with npq7
    Computational Description
    NONPHOTOCHEMICAL QUENCHING 6 (NPQ6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF565 (InterPro:IPR007572); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR