K20920

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20920

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20920

Determination of introduced cDNA(s)

  • J033128K17 - Rice Full-length cDNAs - Original: J033128K17

    full reading [+] show sequence

    Nucleotide sequence: J033128K17 - full reading 
    GCTTCGCCGA CGCCGCCGCC TCCTCGAGAG AGAGAGAGAG ATTGAGAGAG 
    AGCTCCGCGG GAGAGCGCGT CGAAGATGGT GCAGCGGCTG ACCTACCGGA 
    AGCGGCACAG CTACGCCACG AAATCCAACC AGACCCGCGT CGTCAAGACC 
    CCCGGTGGGA GGCTTGTGTA CCAGTACACC AAGAAGCGGG CGAGCGGGCC 
    GAAATGCCCA GTCACCGGGA AGAAGATCCA AGGAATTCCA CACCTGAGAC 
    CTGCTGAGTA CAAGAGGTCC AGATTGTCAA GGAATCGCAG GACCGTGAAC 
    CGTCCTTACG GTGGTGTCCT GTCTGGTACT GCAGTCAGAG AGAGGATCAT 
    CCGGGCTTTT TTGGTCGAGG AGCAGAAGAT TGTGAAGAAG GTGTTGAAGA 
    TCCAGAAGAC CAAGGACAAG TCAGCTAAAT GATTGCAAGA TAGAGACATT 
    GCCGCGATGT TTAAGCTTCT CCAAATTTGT TTTTAAGCAA TCAAGAGAAT 
    TTTTCTTCTG GATTTGGGGG AAATCCCGTT TCCTAGTGCT GCTAGTATGT 
    GAGATCAAAT CGACATGATT GTTTAAATTT TGAGCGCTAG TTCTCTAGAG 
    TACTACTACA ACCTTGTGTG GATCCTTTGA TGCAAGTTTT GAAACTCCCA 
    AGTCCCAAGT TTGCGC

    Gene models with high sequence identity

    1. AT1G26880.1 [+] show detail - Ribosomal protein L34e superfamily protein
      E-value: 2e-44; Score: 176.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L34e 4.1e-37
    PatternScan Ribosomal protein L34e, conserved site 0
    FPrintScan Ribosomal protein L34e 6.8e-31
    FPrintScan Ribosomal protein L34e 6.8e-31
    FPrintScan Ribosomal protein L34e 6.8e-31
    FPrintScan Ribosomal protein L34e 6.8e-31
    HMMPanther Ribosomal protein L34e 7.8e-47

    See the detailed result >

    AT1G26880.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L34e superfamily protein
    Computational Description
    Ribosomal protein L34e superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, nucleolus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e, conserved site (InterPro:IPR018065), Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: ribosomal protein L34 (TAIR:AT1G69620.1); Has 959 Blast hits to 959 proteins in 320 species: Archae - 70; Bacteria - 0; Metazoa - 301; Fungi - 143; Plants - 198; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR