K20921

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20921

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20921

Determination of introduced cDNA(s)

  • J033022J16 - Rice Full-length cDNAs - Original: J033022J16

    full reading [+] show sequence

    Nucleotide sequence: J033022J16 - full reading 
    GAGAGACCAC TCGTCTTCTT CCTTCCGCTC GCTCGCTCGC TCGCTGACGT 
    GTACGCTTCG CGGCGGAGGC GGCGGCGGCG GCTTCCGATG GCGGAGGCGG 
    CGGGGGCGGC GGTGGCGCCG GCGAAGCTGG GTCTGTACTC GTACTGGCGG 
    AGCTCGTGCT CGCACCGCGT CCGCATCGCC CTCAACCTCA AAGGATTGGA 
    GTACGAGTAC AAGGCGGTGA ACCTGCTCAA GGGGGAGCAC TCTGATCCAG 
    AATTCATGAA GGTTAATCCT ATGAAGTTCG TCCCGGCATT GGTCGATGGA 
    GATGCTGTAA TTGGTGATTC TTACGCGATA GCATTATATT TGGAGGACAA 
    GTACCCTGAG CACCCTCTTT TACCTCAAGA CCTTAAAATG AAGGCCTTGA 
    ATCTCCAGAT AGCAAGCATT GTATGCTCTG GAATTCAACC TCTTCACAAT 
    CTTACCGTAC TGGTAAGAAC TGATTTGCAT TCAATTTCTT ACTGCCATAG 
    GTTCATTGAG AAGAAGGTTG GTACAGGGGA GAGCATCCCA TGGACTCAAC 
    AACAGATCGA CAGAGGTTTC GCAGCTGCTG AGAACCTAGT AAAAGGCTGT 
    GCTGGGAAGT ATGCAACAGG AGATGAAGTC CGATTGGCAG ACGTATTCCT 
    CGCACCTCAG ATTTATGCAG CAGTGACTCG TTTTCAAATT AACATGTTAA 
    ATTATCCCAC TCTCGCGAGG CTCCATGAGG AGTATATGAA ACATCCAGCA 
    TTTCAAGCAG CACTCCCAGA CAGACAACCA GATGCCCCTT CCTCTACCTA 
    GAAAATACAG TGTATGTTCA TCTGAAAAAT AGATTAAAAG TTGTACCCAA 
    CTTATCATTG GAAGCTGTAA CAATAAGCAC AGAACTTGTT GCGAAAATTG 
    AAAATAGGTG TATATGTTTT TCAAAGCTTC TGTCCAAATA AATGACCCTT 
    AAAATTGCTA GCC

    Gene models with high sequence identity

    1. AT2G02390.1 [+] show detail - glutathione S-transferase zeta 1
      E-value: 6e-73; Score: 271.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Maleylacetoacetate isomerase 1.2e-96
    superfamily Thioredoxin-like fold 1.9e-31
    superfamily Glutathione S-transferase, C-terminal-like 1.9e-27
    HMMPfam Glutathione S-transferase, N-terminal 6.2e-17
    HMMPfam Glutathione S-transferase, C-terminal 0.00000038
    Gene3D Thioredoxin fold 4.2e-26
    Gene3D Glutathione S-transferase, C-terminal-like 1.7e-40
    HMMPanther GLUTATHIONE-S-TRANSFERASE THETA, GST 9e-62
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 9e-62
    ProfileScan Glutathione S-transferase, N-terminal 28.075
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 19.24

    See the detailed result >

    AT2G02390.1

    Model type
    Protein coding
    Short Description
    glutathione S-transferase zeta 1
    Curator Summary
    Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the oxidant tert-butylhydroperoxide.
    Computational Description
    glutathione S-transferase zeta 1 (GSTZ1); FUNCTIONS IN: glutathione transferase activity, catalytic activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Maleylacetoacetate isomerase (InterPro:IPR005955), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase (class zeta) 2 (TAIR:AT2G02380.1); Has 17196 Blast hits to 17170 proteins in 1512 species: Archae - 0; Bacteria - 9185; Metazoa - 2216; Fungi - 532; Plants - 2070; Viruses - 0; Other Eukaryotes - 3193 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR