K20943

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20943

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20943

Determination of introduced cDNA(s)

  • J023003M06 - Rice Full-length cDNAs - Original: J023003M06

    full reading [+] show sequence

    Nucleotide sequence: J023003M06 - full reading
    GTGCAGCTTT GCAAGGACCA CACTGAAAAA AAAGCTCTCA ACTTTCTCCG 
    TTCCTCTTCC CGGCGGCGGC GATGGATACC ACCAGCTTCC CGGCGGTGTG
    GGCGGTGGTG GGGCCGGGCG TCGCCGGCGC CGTATTCGGG GTCGGCTGGT
    GGTTCTGGGT CGACGCCGTC GTCTGCAGCG CCGCCGCCGT CCCGTTCCTT
    CACTACCTCC CCGGGTTATT TGCTTCGTTC GCCGCGCTCA TGTTCAACTG
    CGTGAAGAGG GAAGACGCCA ACTACAATTA CTACTCGCCC TACGACGACT
    CCGAGTGGAG GTTGAAACTC TGGCTTTTTG TTTCATACGT GGTGTCTTTT
    GTTTCCTTGG CTGGGGCTGT TGGTTTTTTG GTCCAAGACG CACTTACAGA
    TACAGGTCCA TCTGCATGGA CTGGTGTTGC TGGCGTCCTA CAGTCTGTGT
    TTGTGCTTAT AAGTGGGTTG ATGTACTGGA CTTGTCATTC TGAAGATTGA
    TTTAACAAGT ATGCCAAGAT AGACGAGGAA TGTAAAGGCG ATTCGGAAAT
    AACCTTGTTA CGGGATATGT GAAATTTTGT GTCGCACTAT ACAGTTCTGC
    TCATAGTTTA GTAACTCTGT AAATATAATT GCATAACAAG CAGCTCAAGT
    TAGTTTCACT GTGTTACTTT GGAGTAAACA GACCTTTATG AATATAAATA
    GCATATATGG ATCTATATCT TTTTGCGCTA ACC

    Gene models with high sequence identity

    1. AT1G36980.1 [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR...
      E-value: 4e-36; Score: 148.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Uncharacterised protein family UPF0220 2e-42
    HMMPfam Uncharacterised protein family UPF0220 1.5e-32

    See the detailed result >

    AT1G36980.1

    Model type
    Protein coding
    Computational Description
    unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR