K20943

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20943

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20943

Determination of introduced cDNA(s)

  • J023003M06 - Rice Full-length cDNAs - Original: J023003M06

    full reading [+] show sequence

    Nucleotide sequence: J023003M06 - full reading 
    GTGCAGCTTT GCAAGGACCA CACTGAAAAA AAAGCTCTCA ACTTTCTCCG 
    TTCCTCTTCC CGGCGGCGGC GATGGATACC ACCAGCTTCC CGGCGGTGTG 
    GGCGGTGGTG GGGCCGGGCG TCGCCGGCGC CGTATTCGGG GTCGGCTGGT 
    GGTTCTGGGT CGACGCCGTC GTCTGCAGCG CCGCCGCCGT CCCGTTCCTT 
    CACTACCTCC CCGGGTTATT TGCTTCGTTC GCCGCGCTCA TGTTCAACTG 
    CGTGAAGAGG GAAGACGCCA ACTACAATTA CTACTCGCCC TACGACGACT 
    CCGAGTGGAG GTTGAAACTC TGGCTTTTTG TTTCATACGT GGTGTCTTTT 
    GTTTCCTTGG CTGGGGCTGT TGGTTTTTTG GTCCAAGACG CACTTACAGA 
    TACAGGTCCA TCTGCATGGA CTGGTGTTGC TGGCGTCCTA CAGTCTGTGT 
    TTGTGCTTAT AAGTGGGTTG ATGTACTGGA CTTGTCATTC TGAAGATTGA 
    TTTAACAAGT ATGCCAAGAT AGACGAGGAA TGTAAAGGCG ATTCGGAAAT 
    AACCTTGTTA CGGGATATGT GAAATTTTGT GTCGCACTAT ACAGTTCTGC 
    TCATAGTTTA GTAACTCTGT AAATATAATT GCATAACAAG CAGCTCAAGT 
    TAGTTTCACT GTGTTACTTT GGAGTAAACA GACCTTTATG AATATAAATA 
    GCATATATGG ATCTATATCT TTTTGCGCTA ACC

    Gene models with high sequence identity

    1. AT1G36980.1 [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR...
      E-value: 4e-36; Score: 148.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Uncharacterised protein family UPF0220 2e-42
    HMMPfam Uncharacterised protein family UPF0220 1.5e-32

    See the detailed result >

    AT1G36980.1

    Model type
    Protein coding
    Computational Description
    unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR