K21004

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21004

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21004

Determination of introduced cDNA(s)

  • J013132M17 - Rice Full-length cDNAs - Original: J013132M17

    full reading [+] show sequence

    Nucleotide sequence: J013132M17 - full reading 
    TTGGGGATGA TGGACAAAAG AGTTATAGCC AATCTCATGG AGGAGAGGCG 
    GCGGGTAGAA GTCACCAACA ATGGTAGACG CACGACGGAA AATGTCTATG 
    CAGTGTTCAC GGGAAGCGTC GTGCGGCACT ACCCGCGGAG ATTATTTTCC 
    CTCCTTACTT TGGCTCTCGC ATGCGTGGAG GAAGGAAGGT TTAGGCAGAG 
    GCTAATAAGT GGGCGGGTAA GCTGTAAGCA GATCAAGATC TTTATCAGCT 
    GCGCCGTACA ACGCGTGCCT CTGCTCGACC AGGTACCGTG TAGCATCACG 
    GTTACGAATA CAGAGGAGCT CGTGCAAGCA GATTCTGCTG GTGCCAACAA 
    CAACAAGATA TGTGAATGCA CTTTCTTGAA CCCTGGTTCC TGGGATGCTG 
    CGCTTCTGGC GGCTGGAACA ACCTTATCAG CGATGAAGCA CATACTAGAC 
    GGGCATGCCA AGATTGCCTA CGCCTTGGTC CGACCCCCTG GCCATCATGC 
    GCAACCCGAC CGTGCCGATG GCTACTGCTT TCTGAACAAT GCCGGGCTTG 
    CAGTGAAGCT GGCTCTGGAT TCAGGGCGCA GAAGGGTCGC CGTTGTTGAT 
    ATCGATGTGC ACTATGGGAA TGGCACTGCA GAGGGGTTCT ACCACACAGA 
    CAGCGTGCTG ACGATCTCTC TTCACATGAA GCATGGTTCA TGGGGTCCAT 
    CGCATCCCCA GAGCGGCTTG GTTGATGAGA CTGGTGAAGG CAGGGGTCTT 
    GGGTACAATC TCAATATCCC TCTGCCTAAT GGCAGTGGGG ATGCAGGGTA 
    TGAATATGCG ATGAATGAAT TAGTCGTTCC GGCCATTGAG AAGTTTCGCC 
    CTGAGCTTAT GGTTTTCGTT GTTGGCCAAG ATTCTAGTGC GTTTGATCCT 
    AATGGAAGAC AGTGCTTAAC CATGGATGGT TATAGGAAAA TTGGACAAAT 
    AATGAGGGGC ATGGCTGATC AACACAGCAA TGGTCAAATA CTGATTGTCC 
    AGGAAGGAGG TTATCACATC ACCTATTCGG CATATTGTCT GCATGCAACG 
    CTGGAAGGTG TTTTGAATCT GCAGGCCCCA TTGCTTGATG ACCCATTGGG 
    TTTTTATCCA GATGATGAAA AATACACCAT GCAAGCCGTG GACATCATCA 
    AGAAATGCTG GAAAGAATCT ATTCCGTTCT TGAAGGATAT ATAGAAATCC 
    AAGCCTCAAT TTCATATCAA GAGTCTAGGC TCATGGTCTT TCGCCTTAAA 
    GTACATATGT ACTGGAGAAG CATCCGAATG CTTGCCCCTC TCATGAACGA 
    CCTCCAAATT TTCAATTCTC ACTGGTATTG TATGTATCAT GTAGTTGTAC 
    CATTGTTTAC TTGCAGAACC AGTAAGAAAT AACAGGGGTT AAACAAACTA 
    GACAAAACTT CAACCCCTTT ACTATATAGC AGAAGCTCCT ATATATAATC 
    CCATATCCGG TAGTGGAGGC C

    Gene models with high sequence identity

    1. AT1G08460.1 [+] show detail - histone deacetylase 8
      E-value: 4e-113; Score: 405.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Histone deacetylase superfamily 8.4e-73
    superfamily Arginase/deacetylase 2.2e-79
    FPrintScan Histone deacetylase superfamily 8.6e-13
    FPrintScan Histone deacetylase superfamily 8.6e-13
    FPrintScan Histone deacetylase superfamily 8.6e-13
    HMMPanther HISTONE DEACETYLASE-RELATED 1.6e-143
    HMMPanther Histone deacetylase superfamily 1.6e-143
    HMMPfam Histone deacetylase superfamily 1.9e-69

    See the detailed result >

    AT1G08460.1

    Model type
    Protein coding
    Short Description
    histone deacetylase 8
    Computational Description
    histone deacetylase 8 (HDA08); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1); Has 9025 Blast hits to 8820 proteins in 1442 species: Archae - 223; Bacteria - 3178; Metazoa - 1474; Fungi - 641; Plants - 477; Viruses - 0; Other Eukaryotes - 3032 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR