K21004

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21004

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21004

Determination of introduced cDNA(s)

  • J013132M17 - Rice Full-length cDNAs - Original: J013132M17

    full reading [+] show sequence

    Nucleotide sequence: J013132M17 - full reading
    TTGGGGATGA TGGACAAAAG AGTTATAGCC AATCTCATGG AGGAGAGGCG 
    GCGGGTAGAA GTCACCAACA ATGGTAGACG CACGACGGAA AATGTCTATG
    CAGTGTTCAC GGGAAGCGTC GTGCGGCACT ACCCGCGGAG ATTATTTTCC
    CTCCTTACTT TGGCTCTCGC ATGCGTGGAG GAAGGAAGGT TTAGGCAGAG
    GCTAATAAGT GGGCGGGTAA GCTGTAAGCA GATCAAGATC TTTATCAGCT
    GCGCCGTACA ACGCGTGCCT CTGCTCGACC AGGTACCGTG TAGCATCACG
    GTTACGAATA CAGAGGAGCT CGTGCAAGCA GATTCTGCTG GTGCCAACAA
    CAACAAGATA TGTGAATGCA CTTTCTTGAA CCCTGGTTCC TGGGATGCTG
    CGCTTCTGGC GGCTGGAACA ACCTTATCAG CGATGAAGCA CATACTAGAC
    GGGCATGCCA AGATTGCCTA CGCCTTGGTC CGACCCCCTG GCCATCATGC
    GCAACCCGAC CGTGCCGATG GCTACTGCTT TCTGAACAAT GCCGGGCTTG
    CAGTGAAGCT GGCTCTGGAT TCAGGGCGCA GAAGGGTCGC CGTTGTTGAT
    ATCGATGTGC ACTATGGGAA TGGCACTGCA GAGGGGTTCT ACCACACAGA
    CAGCGTGCTG ACGATCTCTC TTCACATGAA GCATGGTTCA TGGGGTCCAT
    CGCATCCCCA GAGCGGCTTG GTTGATGAGA CTGGTGAAGG CAGGGGTCTT
    GGGTACAATC TCAATATCCC TCTGCCTAAT GGCAGTGGGG ATGCAGGGTA
    TGAATATGCG ATGAATGAAT TAGTCGTTCC GGCCATTGAG AAGTTTCGCC
    CTGAGCTTAT GGTTTTCGTT GTTGGCCAAG ATTCTAGTGC GTTTGATCCT
    AATGGAAGAC AGTGCTTAAC CATGGATGGT TATAGGAAAA TTGGACAAAT
    AATGAGGGGC ATGGCTGATC AACACAGCAA TGGTCAAATA CTGATTGTCC
    AGGAAGGAGG TTATCACATC ACCTATTCGG CATATTGTCT GCATGCAACG
    CTGGAAGGTG TTTTGAATCT GCAGGCCCCA TTGCTTGATG ACCCATTGGG
    TTTTTATCCA GATGATGAAA AATACACCAT GCAAGCCGTG GACATCATCA
    AGAAATGCTG GAAAGAATCT ATTCCGTTCT TGAAGGATAT ATAGAAATCC
    AAGCCTCAAT TTCATATCAA GAGTCTAGGC TCATGGTCTT TCGCCTTAAA
    GTACATATGT ACTGGAGAAG CATCCGAATG CTTGCCCCTC TCATGAACGA
    CCTCCAAATT TTCAATTCTC ACTGGTATTG TATGTATCAT GTAGTTGTAC
    CATTGTTTAC TTGCAGAACC AGTAAGAAAT AACAGGGGTT AAACAAACTA
    GACAAAACTT CAACCCCTTT ACTATATAGC AGAAGCTCCT ATATATAATC
    CCATATCCGG TAGTGGAGGC C

    Gene models with high sequence identity

    1. AT1G08460.1 [+] show detail - histone deacetylase 8
      E-value: 4e-113; Score: 405.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Histone deacetylase superfamily 8.4e-73
    superfamily Arginase/deacetylase 2.2e-79
    FPrintScan Histone deacetylase superfamily 8.6e-13
    FPrintScan Histone deacetylase superfamily 8.6e-13
    FPrintScan Histone deacetylase superfamily 8.6e-13
    HMMPanther HISTONE DEACETYLASE-RELATED 1.6e-143
    HMMPanther Histone deacetylase superfamily 1.6e-143
    HMMPfam Histone deacetylase superfamily 1.9e-69

    See the detailed result >

    AT1G08460.1

    Model type
    Protein coding
    Short Description
    histone deacetylase 8
    Computational Description
    histone deacetylase 8 (HDA08); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1); Has 9025 Blast hits to 8820 proteins in 1442 species: Archae - 223; Bacteria - 3178; Metazoa - 1474; Fungi - 641; Plants - 477; Viruses - 0; Other Eukaryotes - 3032 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR