K21009

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21009

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21009

Determination of introduced cDNA(s)

  • J033133C18 - Rice Full-length cDNAs - Original: J033133C18

    full reading [+] show sequence

    Nucleotide sequence: J033133C18 - full reading
    GAGTTCATTG AACTTCACAT AAGCTCACCA AGTAACCAAA ACACATAAGC 
    TCAGCTTCAG CTCAGTCTCC TCCATGGAGC CCAAGTCTTC TTCTTCCTCA
    CACTATCTGC AGCCATCTGC AACATTGCCA TCAACAAGAA GAAACTCATT
    CCAAGGAGTG GGAGCTGAAG CTGGAGGAGG AGGAGGAGGC ATGAACCCAT
    TCGGGCCCAC ATTCAGTGAC CCACTCTGCA GCCTCAACCT CAAGGAGACC
    TCAGAGTTCG TGAGGTCATC CTTCCCCATG GCTACCATGG CGAGGAGCAA
    CAGCAGCAAC GGCGCCACCG GCAATGGCGG CCATGGCTAC CACCGCGGGA
    CCTCCACGGC CTCTTCATCC TCTTCCTCCT CGGCCTCAGC TCAGAGGAGG
    CGAGCCGAGC AGCAGCAGCA GCAGGTGCCA GCTACTCCAG GGCGGCCATT
    GCTGTTCTTC AATTCCTCGA GCCCTGCACA TCACCAGCTC GTCTCCGCGA
    GGAGGTCGGT GCCTTCCAAG TGGGAGGATG CGGAGAAGTG GGTGAGGCAG
    GCGTCGTCCG ACCACCATGG CGGCCATCAC CACCACCATG GCAAGGGCTC
    CAAGCTTCAG GAGGAGAAGA GGGCGTCGGC GGTGAGGAGG TCGGTGGATG
    CTGACGTCAC TGCTCTTGCT CTCTACACTG CTCCTGCTGC AGAAGTGTTC
    CTCAAAGACA AGTTCACTGA CAATGTGGAG CCCTCCAAGG AGAGCTTCGT
    GTTCCGGAGC TCCTACTGCG AGCCAACAAA GAACACGGCG GCGCAGGCGG
    TGGCCGCCGG CAACGGCATC GACCACCGGC GTGACATCGG CACGGAGATG
    ACTCCGCTGG GCAGCTCCAC CACCTCGAGG TGCCACACGC CGATCAAGAG
    CACCTCGCCG GCTAGGCACA ACACGCCGGC GAGCCGGTCG GGCCCCCTGG
    TGCCGTACGC CGGCGGTGGC GGCGGCGCCG GCCAGGACAT CTCGGACCTC
    GCCGACTGCC ACTTCGCCAA GCTGGACCTC GGCGCGCAGT TCGACGCCAT
    GCTCATCAAC TGGAGCTCCA AGGAGGAGGA GGAGGAGGAG GTGTCCAAGA
    GCTTGAGGCA CTTCGAGGCC AGCGTCGCCG CCGTCGGCGA GAAGCGCGGC
    GGCGCCGGCG ACTGCCGGTG GGAGGACGAT GACAGGGCCA AGAGCTGCAT
    AAGGTATCAG AGGGAAGAGG CAAAGATTCA AGCTTGGATC AACCTGGAGA
    GTGCCAAGGC TGAAGCACAG TCCAGAAAGC TAGAGGTGAA GATTCAGAAG
    ATGAGATCAA ACCTGGAGGA GAAGCTGATG AGGAGGATGA CGACCGTGCA
    CCGGCGCGCC GAGGAGTGGA GAGCGACGGC GCAGGCGCAG CACCTCCAGC
    AGCTGAAGCG CGCCGCCGAG CAAGTCCGGC GGGCCAAGGC CACCAGCCAC
    CATCACCACC ACCACCACCT CGCCGGCAGC AACGCCTCCT GCGGCTGCTT
    CCCCTGCAAT GGCAGCAACA ACATCATCAG TGGCAACCTC CTGAACTACT
    ATTAGATATG ATCAGCTAGC CGCCATGGAA GAAGGATCAA GAATGCCAAT
    TTGTTCGGGA GATCAACGGG TTCTTGTTGA TTGTAGTGGA TGTTTGGGAC
    GTGTGAAGAT GGAGATGTGG GAGATAATGG TGTCATGTGT ATCAAAAAAC
    TCTGATTTTT CAAGGTGATA TATACCAGAT TGCTGAATGC

    Gene models with high sequence identity

    1. AT1G53860.1 [+] show detail - Remorin family protein
      E-value: 2e-64; Score: 243.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Remorin, C-terminal 2.8e-25

    See the detailed result >

    AT1G53860.1

    Model type
    Protein coding
    Short Description
    Remorin family protein
    Computational Description
    Remorin family protein; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G30320.1); Has 458 Blast hits to 455 proteins in 58 species: Archae - 2; Bacteria - 9; Metazoa - 29; Fungi - 14; Plants - 379; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR