K21018

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21018

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21018

Determination of introduced cDNA(s)

  • J023014M24 - Rice Full-length cDNAs - Original: J023014M24

    full reading [+] show sequence

    Nucleotide sequence: J023014M24 - full reading
    GGAGTTGGGA ATCCGTTGCT GTCGTACGTC TCGTCTATGG CGTGCTGTAT 
    GTCCTCTCCT TCTTTCTTCC TTTCCAAATA AGCACTCCTC TTCTTCCTCC
    TCCTCCTCCT CCGCCTCCTC TTCTCATTCC CAACTCATCG ATCCATCAGT
    AGCTAGCTAG CTAGCTAGCT AGCTGCATTG TCCGGCGAGA GAGATAGCTG
    CTGCAGGGGG CGGCCATGGG GAGGGGCAAG ATCGAGATCA AGCGGATCGA
    GAACGCGACC AACAGGCAGG TGACCTACTC GAAGCGCCGC ACGGGGATCA
    TGAAGAAGGC CAGGGAGCTC ACCGTACTCT GCGACGCCCA GGTCGCCATC
    ATCATGTTCT CCTCCACCGG CAAGTACCAC GAGTTCTGCA GCCCTTCCAC
    CGACATCAAG GGGATCTTTG ACCGCTACCA GCAAGCCATC GGCACCAGCC
    TTTGGATCGA GCAGTATGAG AATATGCAGC GCACGCTGAG CCATCTCAAG
    GACATCAACC GCAACCTGCG CACCGAGATC AGGCAAAGGA TGGGAGAAGA
    TCTGGACGGG CTGGAGTTCG ACGAGCTGCG CGGTCTTGAG CAAAATGTCG
    ATGCCGCCCT CAAGGAGGTT CGCCACAGGA AGTATCATGT GATCACCACA
    CAGACTGAAA CCTACAAGAA AAAGGTGAAG CACTCCTACG AGGCGTACGA
    GACTCTGCAG CAGGAGCTGG GGTTGCGCGA GGAGCCGGCG TTCGGGTTCG
    TGGACAACAC CGGCGGCGGG TGGGACGGCG GCGCCGGCGC CGGCGCGGCG
    GCGGACATGT TCGCCTTCCG CGTGGTGCCC AGCCAGCCCA ACCTGCACGG
    CATGGCCTAC GGCGGCAACC ACGACCTGCG CCTCGGTTGA TATATCATCG
    CCGCCGCCGC CGCCGCCGCC GGCGGCCTGC TCGTCGCCGG CCGGCCGGCC
    GCCGGACACC GTATCATCGC TCGATCTAGA TAACAAGCCG ACGAATAAAT
    TGCAGTGCTC GTGTTACTTA CCTGCATGCG CATGCATTAT TATCGATCAA
    CGCAAGAACT TCATTTCATT TACCAAACCA CTTGATGTGT GCTATGATCC
    AGCGGTTAAA CCGTGTGTTG TCTCTTGACA TTTTGTACCA GTTACTGATG
    ATGTTGTATT ATGTATGCGT GGTGTGCAAC TGTGCTTGGA TAATTTCACA
    CTTATTTGTC

    Gene models with high sequence identity

    1. AT3G54340.1 [+] show detail - K-box region and MADS-box transcription factor family protein
      E-value: 7e-49; Score: 191.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Transcription factor, MADS-box 2.6e-42
    Coil coiled-coil 0
    superfamily Transcription factor, MADS-box 5e-36
    FPrintScan Transcription factor, MADS-box 2.4e-28
    FPrintScan Transcription factor, MADS-box 2.4e-28
    FPrintScan Transcription factor, MADS-box 2.4e-28
    HMMPanther MADS BOX PROTEIN 3.6e-54
    HMMPfam Transcription factor, MADS-box 2.2e-26
    HMMPfam Transcription factor, K-box 6.7e-25
    ProfileScan Transcription factor, MADS-box 32.674
    ProfileScan Transcription factor, K-box 14.936

    See the detailed result >

    AT3G54340.1

    Model type
    Protein coding
    Short Description
    K-box region and MADS-box transcription factor family protein
    Curator Summary
    Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA.
    Computational Description
    APETALA 3 (AP3); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 71 (TAIR:AT5G51870.1); Has 6838 Blast hits to 6837 proteins in 855 species: Archae - 0; Bacteria - 0; Metazoa - 626; Fungi - 302; Plants - 5820; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR