K21018

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21018

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21018

Determination of introduced cDNA(s)

  • J023014M24 - Rice Full-length cDNAs - Original: J023014M24

    full reading [+] show sequence

    Nucleotide sequence: J023014M24 - full reading 
    GGAGTTGGGA ATCCGTTGCT GTCGTACGTC TCGTCTATGG CGTGCTGTAT 
    GTCCTCTCCT TCTTTCTTCC TTTCCAAATA AGCACTCCTC TTCTTCCTCC 
    TCCTCCTCCT CCGCCTCCTC TTCTCATTCC CAACTCATCG ATCCATCAGT 
    AGCTAGCTAG CTAGCTAGCT AGCTGCATTG TCCGGCGAGA GAGATAGCTG 
    CTGCAGGGGG CGGCCATGGG GAGGGGCAAG ATCGAGATCA AGCGGATCGA 
    GAACGCGACC AACAGGCAGG TGACCTACTC GAAGCGCCGC ACGGGGATCA 
    TGAAGAAGGC CAGGGAGCTC ACCGTACTCT GCGACGCCCA GGTCGCCATC 
    ATCATGTTCT CCTCCACCGG CAAGTACCAC GAGTTCTGCA GCCCTTCCAC 
    CGACATCAAG GGGATCTTTG ACCGCTACCA GCAAGCCATC GGCACCAGCC 
    TTTGGATCGA GCAGTATGAG AATATGCAGC GCACGCTGAG CCATCTCAAG 
    GACATCAACC GCAACCTGCG CACCGAGATC AGGCAAAGGA TGGGAGAAGA 
    TCTGGACGGG CTGGAGTTCG ACGAGCTGCG CGGTCTTGAG CAAAATGTCG 
    ATGCCGCCCT CAAGGAGGTT CGCCACAGGA AGTATCATGT GATCACCACA 
    CAGACTGAAA CCTACAAGAA AAAGGTGAAG CACTCCTACG AGGCGTACGA 
    GACTCTGCAG CAGGAGCTGG GGTTGCGCGA GGAGCCGGCG TTCGGGTTCG 
    TGGACAACAC CGGCGGCGGG TGGGACGGCG GCGCCGGCGC CGGCGCGGCG 
    GCGGACATGT TCGCCTTCCG CGTGGTGCCC AGCCAGCCCA ACCTGCACGG 
    CATGGCCTAC GGCGGCAACC ACGACCTGCG CCTCGGTTGA TATATCATCG 
    CCGCCGCCGC CGCCGCCGCC GGCGGCCTGC TCGTCGCCGG CCGGCCGGCC 
    GCCGGACACC GTATCATCGC TCGATCTAGA TAACAAGCCG ACGAATAAAT 
    TGCAGTGCTC GTGTTACTTA CCTGCATGCG CATGCATTAT TATCGATCAA 
    CGCAAGAACT TCATTTCATT TACCAAACCA CTTGATGTGT GCTATGATCC 
    AGCGGTTAAA CCGTGTGTTG TCTCTTGACA TTTTGTACCA GTTACTGATG 
    ATGTTGTATT ATGTATGCGT GGTGTGCAAC TGTGCTTGGA TAATTTCACA 
    CTTATTTGTC

    Gene models with high sequence identity

    1. AT3G54340.1 [+] show detail - K-box region and MADS-box transcription factor family protein
      E-value: 7e-49; Score: 191.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Transcription factor, MADS-box 2.6e-42
    Coil coiled-coil 0
    superfamily Transcription factor, MADS-box 5e-36
    FPrintScan Transcription factor, MADS-box 2.4e-28
    FPrintScan Transcription factor, MADS-box 2.4e-28
    FPrintScan Transcription factor, MADS-box 2.4e-28
    HMMPanther MADS BOX PROTEIN 3.6e-54
    HMMPfam Transcription factor, MADS-box 2.2e-26
    HMMPfam Transcription factor, K-box 6.7e-25
    ProfileScan Transcription factor, MADS-box 32.674
    ProfileScan Transcription factor, K-box 14.936

    See the detailed result >

    AT3G54340.1

    Model type
    Protein coding
    Short Description
    K-box region and MADS-box transcription factor family protein
    Curator Summary
    Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA.
    Computational Description
    APETALA 3 (AP3); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 71 (TAIR:AT5G51870.1); Has 6838 Blast hits to 6837 proteins in 855 species: Archae - 0; Bacteria - 0; Metazoa - 626; Fungi - 302; Plants - 5820; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR