K21020

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Elements::Others::S

Original: K21020

Determination of introduced cDNA(s)

J023025H16 - Rice Full-length cDNAs - Original: J023025H16

full reading [+] show sequence

GGGTTGGTAG TTAAAAAGGA GCACACACAC AACTCTTGCA AATGTCAGGG 
GGAGGAGGAG CTTTTCCTCT CCTCCATACT ATCTTCTGTT GGAGAACAGC 
AGCAAGCAGA AAAGGGACCA GGGAATCAAA GGCTTCCTGT ATAGATCTTT 
GGAGGAAAGA TCCTTTCTTT CTGCAGGAAT TCAGGGCATT GCTGGTGTCC 
TCTTCAGTTG TGCTAAATCT GTGACGAGTA TGCGCCGCGT CCGGGTCTCA 
TCCCACCAAT CTCCAGTCCA CAAGCTTGGT GATTCACAGA TGAAATTGAC 
ACCCAAATTC CGGCTTGCCA CAACCTCCGC ATTGCCGTCG TCGATGCCGG 
CCTCTGATTT GGAGCAAGCC TCATGGGAGA CACCCCTCAT ACCTGGCCTT 
CCTGATGATG CTGCTCTCAA CTGTCTCCTC CGGCTACCTG TTGAGACCCA 
TGAGGCATGC AGGCTTGTGT GTCGCCGGTG GCATCACCTC CTAGCTGACA 
AGGCGCGGTT CTTCATGCAG AGGAAGGTGA TGGGTTTTCG GTCACCGTTG 
TTGTTCACCC TGGCTTTCCA CCGTTGCACT GGTAAGATAC AGTGGAAGGT 
GCTGGACCTG AACTACTTGA CCTGGCATAC AATTCCTGCC ATGCCGTGTC 
GGGATCGGGC TTGCCCCCGA GGTTTCGGTT GCGTTGCTAT CCCCAGTGAC 
GGCACCCTCC TTGTTTGCGG CGGGTTGGTC TCGGACATGG ATTGCCCATT 
GCACTTGGTC CTTAAGTATG ATGTTTATAA GAACCGATGG ACCGTGATGA 
CTCGAATGCT TGCTGCACGG TCTTTCTTTG CGGGTGGCGT CATTGATGGA 
CGGGTTTATG TAGCTGGAGG TTATAGTACT GACCAGTTTG AGCTCAATTC 
AGCAGAGGTT CTTGATCCGG TTAAGGGTGT GTGGCAACCA GTTGCTAGTA 
TGGGCATGAA CATGGCATCC TCGGATTCTG CTGTCATCAG TGGTAGGCTT 
TATGTCACTG AAGGCTGTGC ATGGCCTTTC TTCTCCTCGC CGAGAGGTCA 
GGTTATGATC CAAAGATTGA CCGCTGGGAG GTTATGCCAG TTGGAATGCG 
TGAAGGGTGG ACCGGTTTAA GTGTTGTCAT CGACAAACAT TTGTTCGTCA 
TTTCAGAATA TGAGAGGATG AAGGTTAAAG TCTACGATCC AGAAACGGAC 
TCATGGGACT CTGTAAAAGG CCCTCCTATG CCTGAACGAA TTATGAAGCC 
ATTTTCGGTG AGTTGTTTGG AGAATAAGAT TGTTGTTGTT GGCCGAGGCC 
TCCATGTAGC TATTGGCCAT GTCAAGAAGC AACCTGGCAG CCATCCTGAT 
AGTAGGAGCT CAAGCTACTT AATTCAGTGG CAAGATGTGT GTGTTCCTAG 
GGAATTTGGT GATCTGACAC CTTCAAACAG TCAGATTTTG TATGCTTAAC 
TGCTGAAAAT GCCGGATCTG CAGAGAGGCC ATTGTTGTTC TTTCATTTTA 
TTTGGCCAAC TGGGTAAAGC CCTATTCTGA GCTGTAAAAT TGTTCTCCTC 
TGTATGTTAG TCTCTTTCCC AGTTAATTTT ACAGCCTGTA AGTGTTATGT 
CAGTAAATAA ATAAAAAAAT TCAAGAGATT GTTGTAAGTA GAAGTTTGCC 
GGTACTTGAG ACAATTTGTT GTATTTGCTC TTTAAACTGA TTTTGACTTC 
TTGTT

Gene models with high sequence identity

AT1G30090.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
E-value: 6e-133; Score: 152.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	KELCH-RELATED	0.00032
HMMPanther	Kelch related	0.00032
HMMPanther	KELCH-RELATED	3.5e-14
HMMPanther	Kelch related	3.5e-14
superfamily	Galactose oxidase/kelch, beta-propeller	3.9e-07
superfamily	Galactose oxidase/kelch, beta-propeller	8.7e-33
HMMSmart	Kelch repeat type 1	0.063
HMMSmart	Kelch repeat type 1	1.8e-07
HMMPfam	Kelch repeat type 1	5.4e-12
HMMPfam	F-box domain, cyclin-like	9.2e-07
Gene3D	Kelch-type beta propeller	7.4e-07
Gene3D	Kelch-type beta propeller	2.9e-27

See the detailed result >

AT1G30090.1

Model type: Protein coding
Short Description: Galactose oxidase/kelch repeat superfamily protein
Computational Description: Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G24540.1); Has 6648 Blast hits to 4175 proteins in 221 species: Archae - 14; Bacteria - 391; Metazoa - 4969; Fungi - 0; Plants - 1047; Viruses - 9; Other Eukaryotes - 218 (source: NCBI BLink).
Link: InterPro Scan - TAIR