K21044

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21044

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21044

Determination of introduced cDNA(s)

  • J013067N05 - Rice Full-length cDNAs - Original: J013067N05

    full reading [+] show sequence

    Nucleotide sequence: J013067N05 - full reading
    GGGCGTAAAA GAAAAATCTC CCGTCTCGTC GTCGCCTCCG CTCCTTGCGC 
    CATCTCGCGG CGCCGATCTC CTTCTGGCGA GCCGAGCAGA GCAGACCAGG
    GCAGGGGAGC GGAGGGGATC CTAGGTGTTG CAGTTTCTTT TCTCGTGGAC
    GGTCTAAAGG TGGTGAAGAG GCTGTACAGA TCACGATCCC GCAAGTGAGG
    TTTGAGGATG ATGAACTAAA GGGCTTGTCC GAGCTACTGC GGCAGGAGAT
    CTGATAAAAC CAGTCAAGAG GCGAGTCTCA GAGGTGCTAG GACGAGATGG
    ATGAAGTTGC TGAGATTGCT GATGCTATGG GTACGGTTGG CATTGATAAT
    GGGGCAAGCC GGAAGTTGTT GTCGAACGAG AGTTTAGAGG AGCGAGGAGA
    AGAGCATGAT GTGCAGGCTG ATGGGGCGCA CTCGGGTGAG AGTGAGGTGA
    TCAACCCCGC TGAGGAGGTG GGTGGAGAAG CCACCTCACA GCCAGAAGAC
    GTAAAGCCGC GTGTTTCCAA GGGAAGCCAA AGTCATTCCC CTAAGGTTAC
    TACCAAATCT CAGCGCCAGA GCCCACGAAG TGGAGATAAG AGTCAAGCTA
    GGAAAAACAG TCCCGGTTCT ACTTATCCCA AGGCACCCAT TGCACGAGTG
    TCTGACCCAG ATTTGGTTGA TAGCTCTTCA TGCAATGATG GTGCTGATAT
    TAAGAAAGCT GAAAAGAGCA GTTTCCGTCC AGTTGCCAGG GCGAGTCAAT
    CACTGGAGGA CTCAAAGGAA AAGAAGAAAA CTCAGAAAAC ATCAAACCAA
    TGTTCTGTCA AAAATGATGA AGAAGAGCCA AACTGTGAAA AAGTAAAGCC
    TCAAAGGGTT GGCAGCACTC CTGCGTACGG ATTTGCATTC AAATGTGATG
    AGAGAGCTGA AAAAAGAAGA GAGTTCTACT CAAAGCTTGA GGAGAAGATT
    CATGCACAGG AATTGGAGAA AAGCAACATG CAGGCGAAAT CAAAGGAAAC
    AGAAGAAGCT GAACTCAAAA AGCTAAGGAA GAGTTTGAAT TTTAGGGCAA
    ATCCAATGCC CAGCTTTTAT AAGGAACCAC CTCCTCCCAA GGTTGAGTTG
    AAAAAGATCC CTACCACCAG AGCTAGATCA CCAAAGCTTG GCCGCTCAAA
    GAACACAAGC TCAGTAAGCA CTGAAGAAAG TACCGTTCCT TCAAGCCGCC
    CAGCTCGTCT GAGCCTGGAT GAAAGGGCCT CCCAGAATGG TGTGAAGAAG
    GTGCCTGCTG CGAACACGGT GAGGAAGCCC CAACGGAAGT CTCTCCCCAA
    ACTGCCATCA GAGCAAACAG TCACTGAACA GGTAGAAAAC AACACGTCGG
    CTACAGATCC CGTTCGGGAG CTGATCCGTG CCCAAGTTAC CCCGGATGAT
    CAATTTGGTG GATAGAAAAG CTACCAATTT GAGCCGCCCA AAGAAACGCG
    CAAGTTATGC CTCAACTTCC TATATTTCAT TCTCTGCTAT TTCTGCTGTA
    AAACTGCTGG ATATGCCACT ACTATGTACT AAAATTAGTC CTCATCACCA
    GGAGTTTCGA AGAACGCAAG TAGCCCCTGT AATGTTTATC TTGTCAATTT
    TTGTTCTTGA TACAAGAGAG GAGGAACCTA CTGTTGTTAT TTGTAGTTGG
    TAACAATTGC ATATGACCAT ATCCTATTTC CTAGGCTAGA AGAACTTATT
    ATTTCCATAT GAATTACCCT GCCTTTTTCT CTTTAGCAAA TAAGCAATAA
    ACTTTGTGCA TTCTATCTTG TT

    Gene models with high sequence identity

    1. AT4G32330.3 [+] show detail - TPX2 (targeting protein for Xklp2) protein family
      E-value: 4e-43; Score: 173.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Xklp2 targeting protein 1.4e-21

    See the detailed result >

    AT4G32330.3

    Model type
    Protein coding
    Short Description
    TPX2 (targeting protein for Xklp2) protein family
    Computational Description
    TPX2 (targeting protein for Xklp2) protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT2G25480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR