K21044

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark)
	root (PO:0009005)	present in greater numbers in organism (PATO:0000470) (Root::Number::many)
	petal (PO:0009032)	abnormal (PATO:0000460) (Flower::Shape::petal)
	flower (PO:0009046)	abnormal (PATO:0000460) (Flower::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21044

Determination of introduced cDNA(s)

J013067N05 - Rice Full-length cDNAs - Original: J013067N05

full reading [+] show sequence

GGGCGTAAAA GAAAAATCTC CCGTCTCGTC GTCGCCTCCG CTCCTTGCGC 
CATCTCGCGG CGCCGATCTC CTTCTGGCGA GCCGAGCAGA GCAGACCAGG 
GCAGGGGAGC GGAGGGGATC CTAGGTGTTG CAGTTTCTTT TCTCGTGGAC 
GGTCTAAAGG TGGTGAAGAG GCTGTACAGA TCACGATCCC GCAAGTGAGG 
TTTGAGGATG ATGAACTAAA GGGCTTGTCC GAGCTACTGC GGCAGGAGAT 
CTGATAAAAC CAGTCAAGAG GCGAGTCTCA GAGGTGCTAG GACGAGATGG 
ATGAAGTTGC TGAGATTGCT GATGCTATGG GTACGGTTGG CATTGATAAT 
GGGGCAAGCC GGAAGTTGTT GTCGAACGAG AGTTTAGAGG AGCGAGGAGA 
AGAGCATGAT GTGCAGGCTG ATGGGGCGCA CTCGGGTGAG AGTGAGGTGA 
TCAACCCCGC TGAGGAGGTG GGTGGAGAAG CCACCTCACA GCCAGAAGAC 
GTAAAGCCGC GTGTTTCCAA GGGAAGCCAA AGTCATTCCC CTAAGGTTAC 
TACCAAATCT CAGCGCCAGA GCCCACGAAG TGGAGATAAG AGTCAAGCTA 
GGAAAAACAG TCCCGGTTCT ACTTATCCCA AGGCACCCAT TGCACGAGTG 
TCTGACCCAG ATTTGGTTGA TAGCTCTTCA TGCAATGATG GTGCTGATAT 
TAAGAAAGCT GAAAAGAGCA GTTTCCGTCC AGTTGCCAGG GCGAGTCAAT 
CACTGGAGGA CTCAAAGGAA AAGAAGAAAA CTCAGAAAAC ATCAAACCAA 
TGTTCTGTCA AAAATGATGA AGAAGAGCCA AACTGTGAAA AAGTAAAGCC 
TCAAAGGGTT GGCAGCACTC CTGCGTACGG ATTTGCATTC AAATGTGATG 
AGAGAGCTGA AAAAAGAAGA GAGTTCTACT CAAAGCTTGA GGAGAAGATT 
CATGCACAGG AATTGGAGAA AAGCAACATG CAGGCGAAAT CAAAGGAAAC 
AGAAGAAGCT GAACTCAAAA AGCTAAGGAA GAGTTTGAAT TTTAGGGCAA 
ATCCAATGCC CAGCTTTTAT AAGGAACCAC CTCCTCCCAA GGTTGAGTTG 
AAAAAGATCC CTACCACCAG AGCTAGATCA CCAAAGCTTG GCCGCTCAAA 
GAACACAAGC TCAGTAAGCA CTGAAGAAAG TACCGTTCCT TCAAGCCGCC 
CAGCTCGTCT GAGCCTGGAT GAAAGGGCCT CCCAGAATGG TGTGAAGAAG 
GTGCCTGCTG CGAACACGGT GAGGAAGCCC CAACGGAAGT CTCTCCCCAA 
ACTGCCATCA GAGCAAACAG TCACTGAACA GGTAGAAAAC AACACGTCGG 
CTACAGATCC CGTTCGGGAG CTGATCCGTG CCCAAGTTAC CCCGGATGAT 
CAATTTGGTG GATAGAAAAG CTACCAATTT GAGCCGCCCA AAGAAACGCG 
CAAGTTATGC CTCAACTTCC TATATTTCAT TCTCTGCTAT TTCTGCTGTA 
AAACTGCTGG ATATGCCACT ACTATGTACT AAAATTAGTC CTCATCACCA 
GGAGTTTCGA AGAACGCAAG TAGCCCCTGT AATGTTTATC TTGTCAATTT 
TTGTTCTTGA TACAAGAGAG GAGGAACCTA CTGTTGTTAT TTGTAGTTGG 
TAACAATTGC ATATGACCAT ATCCTATTTC CTAGGCTAGA AGAACTTATT 
ATTTCCATAT GAATTACCCT GCCTTTTTCT CTTTAGCAAA TAAGCAATAA 
ACTTTGTGCA TTCTATCTTG TT

Gene models with high sequence identity

AT4G32330.3 [+] show detail - TPX2 (targeting protein for Xklp2) protein family
E-value: 4e-43; Score: 173.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
HMMPfam	Xklp2 targeting protein	1.4e-21

See the detailed result >

AT4G32330.3

Model type: Protein coding
Short Description: TPX2 (targeting protein for Xklp2) protein family
Computational Description: TPX2 (targeting protein for Xklp2) protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT2G25480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR