K21101

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21101

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21101

Determination of introduced cDNA(s)

  • J023085P15 - Rice Full-length cDNAs - Original: J023085P15

    full reading [+] show sequence

    Nucleotide sequence: J023085P15 - full reading
    ATTTTTGCTG CCCTGTGGAG CCTCAAATTC TACTCGCGTT TTCATGACTG 
    CCCTATAGAT CAGCTCCTGA TTGGAAGGAC TGTAGTTCCA TGAGATAGAA
    GGGCATATTG AAGTAGAATT TGGCCTTTGG TGAATCTAAA TGGACAGTGG
    CTTGGGAAGA AGTTCAGAGA CATCCTTGAA AGCCTTGCCA TCAATGGCAA
    GTAATGCAAC AAGGAATACT GATCCTGACC AACAGGGTGT TCGATTCAGT
    TCCATGGACC AGCCTCCATG TTTTGCAAGA CCTGGTCAAT CGTTCCCTGC
    TTTTCCTCCA CTCTTTGGGG TTCAGTCTTC CAGCTTGTAT TTACCTGATG
    ACATTGAAGC TAAAATCGGT AACCAGTTCG AATCAAATCC TTCCCCGAAT
    AATCCTACAA TGGATTGGGA CCCTCAGGCA ATGCTGAGCA ACTTATCCTT
    CCTTGAGCAG AAGATCAAGC AGGTAAAAGA CATCGTGCAG TCTATGAGTA
    ATCGTGAGAG CCAAGTTGCT GGTGGTTCCA GCGAGGCACA AGCAAAGCAG
    CAGCTTGTCA CTGCTGATCT CACTTGTATT ATAATTCAGC TTATTTCAAC
    AGCTGGTTCC TTGCTTCCTT CGATGAAGAA CCCAATCAGC AGCAACCCGG
    CACTCAGACA TCTCAGTAAC ACACTTTGTG CTCCTATGAT CCTGGGCACC
    AATTGTAACC TGCGACCAAG CGCAAACGAC GAAGCCACAA TTCCTGACAT
    TAGCAAGACC CATGACTATG AGGAGCTGAT GAATAGCCTT AATACTACTC
    AGGCAGAAAG CGATGAGATG ATGAACTGCC AAAATCCTTG TGGTGGGGAA
    GGGTCAGAAC CGATTCCAAT GGAAGACCAT GATGTGAAGG AGAGTGATGA
    TGGTGGTGAG AGAGAGAATC TCCCCCCTGG GTCTTATGTA GTATTGCAAT
    TAGAGAAGGA GGAGATTTTA GCACCACATA CTCACTTCTG CTTGATCTGT
    GGCAAGGGTT TTAAAAGAGA TGCTAATCTT AGGATGCACA TGAGGGGCCA
    TGGAGACGAG TACAAAACTG CTGCAGCTCT TGCGAAACCT TCGAAAGATT
    CTAGCTTAGA GTCTGCACCA GTTACAAGGT ACTCGTGCCC ATATGTTGGC
    TGCAAGCGGA ACAAAGAGCA CAAGAAGTTC CAGCCTCTCA AGACAATCCT
    GTGTGTGAAG AACCACTACA AGAGAAGCCA CTGTGACAAG AGCTACACCT
    GCAGCCGTTG CAACACCAAG AAGTTCTCAG TTATCGCGGA CTTGAAGACT
    CATGAAAAGC ACTGTGGCCG CGACAAGTGG CTATGCTCGT GTGGAACTAC
    CTTCTCAAGA AAAGACAAGT TATTTGGGCA TGTTGCTCTT TTCCAAGGGC
    ACACGCCTGC ACTCCCTATG GATGATATCA AAGTAACAGG AGCATCAGAG
    CAACCTCAAG GCAGCGAGGC GATGAACACC ATGGTGGGGA GCGCTGGGTA
    TAACTTCCCC GGTAGCTCAT CGGACGACAT CCCAAATCTT GACATGAAGA
    TGGCTGATGA TCCACGCTAT TTCTCGCCAT TGAGCTTTGA TCCTTGCTTC
    GGTGGGCTTG ATGACTTCAC TCGACCTGGA TTTGACATCT CTGAGAATCC
    CTTCTCCTTC TTGCCCTCAG GATCATGCAG CTTCGGGCAG CAGAACGGAG
    ACAGCTGATC GAGGCCAACG TTAACGATGA CGGCAATGGC CTTGCCTACC
    TTTGTGTACC TTGTCTAGCC CTATTCTTCC TCTGTTGAAG GAGCCATTTT
    AGGTCATTCC TTCTTCCTGA AGTGTACTTT ATTTTATGAT CATCAGTAAT
    GATCAAGTAC TTTTTATCTT TCCTTATAGA TTGAGATAGC CCAATCTTGG
    TATATATATG CAAGAAGCGT TTCTAATTAA AAACGAAATG GGAGTGACTC
    CAGTATTGTT TGAGCAACCA GTTCATCGAG ATGACTGGGA AGGTCTCCGC
    GATGTTAGCA TTGTTGCCAA GGAGAAATAC AGAGTTGCTG TTGCAGCTGA
    TGAAAGTTGT CGTAGTTTGC TTGATGCTCA GAAAATAATG GATGGAAATC
    TTGCTCATGT TATTAACATC AAGCTAGCAA AGCTAGGGAT TCTTGGAGCC
    CTTGAAGTAA TTGATGCTGC AAGAAAAGCC CGCATTGCGC TGATGATAGG
    CGGTATGGTT GAGACTAGGA TCGCTATGGG CTTTGCTGGT CATCTTGCAG
    CTGGTCTTGG TTGTTTCAGT TTTGTTGACC TGGACACACC TCTTTTACTG
    TCTGAAGATC CAGTGTTCGG TGGCTATGAA GTTTCTGGAC CTGTATACAA
    GTTTACAAAT GCTCGAGGCC ATGGTGGTTT CCTTCACTTA GACAACAACG
    GCTTGAAATA AGGAATGCCC TAGCCCTTTG GGAGCTTCAC AGACAACGGT
    GACACGTTCA ATGAACAATT AATTGTTCAT TATTTACCTT CAACAATAAT
    CAATTGGAGT TGAAACCAAA GGAGCAGTTG TAAACTTGTA ATCCTATATG
    ACCTTGAAGA GGCTAATTAT TGTTGCCAGT CCAGTTAGGC CTGAAATATT
    TGATCAGTCT GTAGATGGAT AAAATAATGA GGCATTTTCA GCTGGCCTTG
    TTGTTCTGTT CGATAAATAA ATTACTAAAT ATGGTATAAA AGACCTTATG
    TATGCAGCCT CAAATATGCT CAAGTACAAT GTATTATGCC T

    Gene models with high sequence identity

    1. AT1G34370.2 [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
      E-value: 4e-128; Score: 456.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR11389 2.59999946718996e-08
    ProfileScan Zinc finger, C2H2-type 0
    PatternScan Zinc finger, C2H2-type 0
    HMMSmart Zinc finger, C2H2-like 0.0109999999702296
    HMMSmart Zinc finger, C2H2-like 57.9999972262536
    HMMSmart Zinc finger, C2H2-like 19.0000016324847
    superfamily Enolase C-terminal domain-like 6.7e-26
    HMMPanther MUCONATE CYCLOISOMERASE 2.8e-66
    HMMPanther Mandelate racemase/muconate lactonizing enzyme 2.8e-66
    Gene3D no description 7e-24
    HMMPfam Methylaspartate ammonia-lyase 3.3e-05

    See the detailed result >

    AT1G34370.2

    Model type
    Protein coding
    Short Description
    C2H2 and C2HC zinc fingers superfamily protein
    Curator Summary
    Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity. In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity.
    Computational Description
    sensitive to proton rhizotoxicity 1 (STOP1); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT5G22890.1); Has 25295 Blast hits to 14002 proteins in 194 species: Archae - 0; Bacteria - 2; Metazoa - 23814; Fungi - 97; Plants - 697; Viruses - 0; Other Eukaryotes - 685 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR