K21101

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21101

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21101

Determination of introduced cDNA(s)

  • J023085P15 - Rice Full-length cDNAs - Original: J023085P15

    full reading [+] show sequence

    Nucleotide sequence: J023085P15 - full reading 
    ATTTTTGCTG CCCTGTGGAG CCTCAAATTC TACTCGCGTT TTCATGACTG 
    CCCTATAGAT CAGCTCCTGA TTGGAAGGAC TGTAGTTCCA TGAGATAGAA 
    GGGCATATTG AAGTAGAATT TGGCCTTTGG TGAATCTAAA TGGACAGTGG 
    CTTGGGAAGA AGTTCAGAGA CATCCTTGAA AGCCTTGCCA TCAATGGCAA 
    GTAATGCAAC AAGGAATACT GATCCTGACC AACAGGGTGT TCGATTCAGT 
    TCCATGGACC AGCCTCCATG TTTTGCAAGA CCTGGTCAAT CGTTCCCTGC 
    TTTTCCTCCA CTCTTTGGGG TTCAGTCTTC CAGCTTGTAT TTACCTGATG 
    ACATTGAAGC TAAAATCGGT AACCAGTTCG AATCAAATCC TTCCCCGAAT 
    AATCCTACAA TGGATTGGGA CCCTCAGGCA ATGCTGAGCA ACTTATCCTT 
    CCTTGAGCAG AAGATCAAGC AGGTAAAAGA CATCGTGCAG TCTATGAGTA 
    ATCGTGAGAG CCAAGTTGCT GGTGGTTCCA GCGAGGCACA AGCAAAGCAG 
    CAGCTTGTCA CTGCTGATCT CACTTGTATT ATAATTCAGC TTATTTCAAC 
    AGCTGGTTCC TTGCTTCCTT CGATGAAGAA CCCAATCAGC AGCAACCCGG 
    CACTCAGACA TCTCAGTAAC ACACTTTGTG CTCCTATGAT CCTGGGCACC 
    AATTGTAACC TGCGACCAAG CGCAAACGAC GAAGCCACAA TTCCTGACAT 
    TAGCAAGACC CATGACTATG AGGAGCTGAT GAATAGCCTT AATACTACTC 
    AGGCAGAAAG CGATGAGATG ATGAACTGCC AAAATCCTTG TGGTGGGGAA 
    GGGTCAGAAC CGATTCCAAT GGAAGACCAT GATGTGAAGG AGAGTGATGA 
    TGGTGGTGAG AGAGAGAATC TCCCCCCTGG GTCTTATGTA GTATTGCAAT 
    TAGAGAAGGA GGAGATTTTA GCACCACATA CTCACTTCTG CTTGATCTGT 
    GGCAAGGGTT TTAAAAGAGA TGCTAATCTT AGGATGCACA TGAGGGGCCA 
    TGGAGACGAG TACAAAACTG CTGCAGCTCT TGCGAAACCT TCGAAAGATT 
    CTAGCTTAGA GTCTGCACCA GTTACAAGGT ACTCGTGCCC ATATGTTGGC 
    TGCAAGCGGA ACAAAGAGCA CAAGAAGTTC CAGCCTCTCA AGACAATCCT 
    GTGTGTGAAG AACCACTACA AGAGAAGCCA CTGTGACAAG AGCTACACCT 
    GCAGCCGTTG CAACACCAAG AAGTTCTCAG TTATCGCGGA CTTGAAGACT 
    CATGAAAAGC ACTGTGGCCG CGACAAGTGG CTATGCTCGT GTGGAACTAC 
    CTTCTCAAGA AAAGACAAGT TATTTGGGCA TGTTGCTCTT TTCCAAGGGC 
    ACACGCCTGC ACTCCCTATG GATGATATCA AAGTAACAGG AGCATCAGAG 
    CAACCTCAAG GCAGCGAGGC GATGAACACC ATGGTGGGGA GCGCTGGGTA 
    TAACTTCCCC GGTAGCTCAT CGGACGACAT CCCAAATCTT GACATGAAGA 
    TGGCTGATGA TCCACGCTAT TTCTCGCCAT TGAGCTTTGA TCCTTGCTTC 
    GGTGGGCTTG ATGACTTCAC TCGACCTGGA TTTGACATCT CTGAGAATCC 
    CTTCTCCTTC TTGCCCTCAG GATCATGCAG CTTCGGGCAG CAGAACGGAG 
    ACAGCTGATC GAGGCCAACG TTAACGATGA CGGCAATGGC CTTGCCTACC 
    TTTGTGTACC TTGTCTAGCC CTATTCTTCC TCTGTTGAAG GAGCCATTTT 
    AGGTCATTCC TTCTTCCTGA AGTGTACTTT ATTTTATGAT CATCAGTAAT 
    GATCAAGTAC TTTTTATCTT TCCTTATAGA TTGAGATAGC CCAATCTTGG 
    TATATATATG CAAGAAGCGT TTCTAATTAA AAACGAAATG GGAGTGACTC 
    CAGTATTGTT TGAGCAACCA GTTCATCGAG ATGACTGGGA AGGTCTCCGC 
    GATGTTAGCA TTGTTGCCAA GGAGAAATAC AGAGTTGCTG TTGCAGCTGA 
    TGAAAGTTGT CGTAGTTTGC TTGATGCTCA GAAAATAATG GATGGAAATC 
    TTGCTCATGT TATTAACATC AAGCTAGCAA AGCTAGGGAT TCTTGGAGCC 
    CTTGAAGTAA TTGATGCTGC AAGAAAAGCC CGCATTGCGC TGATGATAGG 
    CGGTATGGTT GAGACTAGGA TCGCTATGGG CTTTGCTGGT CATCTTGCAG 
    CTGGTCTTGG TTGTTTCAGT TTTGTTGACC TGGACACACC TCTTTTACTG 
    TCTGAAGATC CAGTGTTCGG TGGCTATGAA GTTTCTGGAC CTGTATACAA 
    GTTTACAAAT GCTCGAGGCC ATGGTGGTTT CCTTCACTTA GACAACAACG 
    GCTTGAAATA AGGAATGCCC TAGCCCTTTG GGAGCTTCAC AGACAACGGT 
    GACACGTTCA ATGAACAATT AATTGTTCAT TATTTACCTT CAACAATAAT 
    CAATTGGAGT TGAAACCAAA GGAGCAGTTG TAAACTTGTA ATCCTATATG 
    ACCTTGAAGA GGCTAATTAT TGTTGCCAGT CCAGTTAGGC CTGAAATATT 
    TGATCAGTCT GTAGATGGAT AAAATAATGA GGCATTTTCA GCTGGCCTTG 
    TTGTTCTGTT CGATAAATAA ATTACTAAAT ATGGTATAAA AGACCTTATG 
    TATGCAGCCT CAAATATGCT CAAGTACAAT GTATTATGCC T

    Gene models with high sequence identity

    1. AT1G34370.2 [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
      E-value: 4e-128; Score: 456.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR11389 2.59999946718996e-08
    ProfileScan Zinc finger, C2H2-type 0
    PatternScan Zinc finger, C2H2-type 0
    HMMSmart Zinc finger, C2H2-like 0.0109999999702296
    HMMSmart Zinc finger, C2H2-like 57.9999972262536
    HMMSmart Zinc finger, C2H2-like 19.0000016324847
    superfamily Enolase C-terminal domain-like 6.7e-26
    HMMPanther MUCONATE CYCLOISOMERASE 2.8e-66
    HMMPanther Mandelate racemase/muconate lactonizing enzyme 2.8e-66
    Gene3D no description 7e-24
    HMMPfam Methylaspartate ammonia-lyase 3.3e-05

    See the detailed result >

    AT1G34370.2

    Model type
    Protein coding
    Short Description
    C2H2 and C2HC zinc fingers superfamily protein
    Curator Summary
    Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity. In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity.
    Computational Description
    sensitive to proton rhizotoxicity 1 (STOP1); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT5G22890.1); Has 25295 Blast hits to 14002 proteins in 194 species: Archae - 0; Bacteria - 2; Metazoa - 23814; Fungi - 97; Plants - 697; Viruses - 0; Other Eukaryotes - 685 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR