K21106

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21106

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21106

Determination of introduced cDNA(s)

  • J013160I04 - Rice Full-length cDNAs - Original: J013160I04

    full reading [+] show sequence

    Nucleotide sequence: J013160I04 - full reading 
    GAGGGCTAGG GCTAGGGTTT GAGGTCGGGC GCGCGCGGCA TGGCGGGGAT 
    ACGGTGGCCG CCCGAGGACC CGGAGATCTT CCCGCCGCCT CCGGCCCCGC 
    CGCCGCCACG ACGGCGTCGG TCGCCGCCAA CCCCTCCGGA GATTTCAGCT 
    TTGACAAGGA CGTGCCAGAC TCCGCCGATA TGGAGCCGCC GTTGCTGGGC 
    CTGCCGAATT ATCATCAGGA TGGTTCTTAT GCAGAATACC TTGCTAATTT 
    TCAAGAACGG AGCCACACAG ATGACTGGTT TGGCACGGAG AACATGGATG 
    TCCTCGTAAG CTGGACGAAA AACTTATGTT CCAACAAGGA TTTGCGTAGC 
    TGCAGTGTAC TCGACATAGG AACTGGGAGC GGTCGACTCT CGCAACAGCT 
    TGCAAAGCAA GGGTTCTCTG ATCTGACTGG GATCGACCAC AGTGAAGGTG 
    CAATTGAGGT TGCTCGTAAT CTTGCTATCC GTGATGGGTT TGAGCACATT 
    AATTTCTTGG TTGATGATGT GTTAGAGTCA AAGTTGGAGA GGAGATTTGA 
    ACTTGTGATG GATGAAGGAA CTCTGGACAC GATTGGGTTG CACCCCGATG 
    GACCTGTAAA GAGAATGATG TATTGGCAGT CGGTTGCAGG GCTGGTTTCT 
    CCTGGTGGCA TACTGGTCAT CACATCATGT AGCAGAACCA AGGATGAGTT 
    GGTCCAGGAG GTAGAGAGCT TCAACCAGAG AAAGCTCAGT GCTATGGGCT 
    CCGAAGGTGC GCAGGCCAGT GATACTGCGG TGTTCAAGTA CATCGACCAT 
    GTCCAAACGT ACCCCATCGT GGATAGTTCC TGCATCACGA CCGTTGCTTT 
    CTCGCATAGC TGAAACATAT ATGTATGCTC TCTCTTTTTC TCCCTAACTT 
    TGCCATCCCA GTGTGTATCC CCTTTACCCT AGTTCTCTTC GGGTGATAGT 
    CTACTTTGCC AGATAGGTTA TTCAGTTGTA ACGTTGCTTT GTTACGTCTT 
    GAATTCTTGA TGGATGTACT CTTTTGAAAG CGTGACAAGC AACACTATTA 
    CACC

    Gene models with high sequence identity

    1. AT1G66680.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 1e-67; Score: 253.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SSF53335 1.2e-25
    HMMPanther PTHR12843 2.60000517657743e-46
    Gene3D G3DSA:3.40.50.150 5.69999708784002e-14
    HMMPfam Methyltransferase small 1.5e-05

    See the detailed result >

    AT1G66680.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Curator Summary
    unknown function
    Computational Description
    AR401; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 12 (InterPro:IPR013217); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G60910.1); Has 1054 Blast hits to 1053 proteins in 391 species: Archae - 16; Bacteria - 384; Metazoa - 157; Fungi - 144; Plants - 125; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR