K21106

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21106

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21106

Determination of introduced cDNA(s)

  • J013160I04 - Rice Full-length cDNAs - Original: J013160I04

    full reading [+] show sequence

    Nucleotide sequence: J013160I04 - full reading
    GAGGGCTAGG GCTAGGGTTT GAGGTCGGGC GCGCGCGGCA TGGCGGGGAT 
    ACGGTGGCCG CCCGAGGACC CGGAGATCTT CCCGCCGCCT CCGGCCCCGC
    CGCCGCCACG ACGGCGTCGG TCGCCGCCAA CCCCTCCGGA GATTTCAGCT
    TTGACAAGGA CGTGCCAGAC TCCGCCGATA TGGAGCCGCC GTTGCTGGGC
    CTGCCGAATT ATCATCAGGA TGGTTCTTAT GCAGAATACC TTGCTAATTT
    TCAAGAACGG AGCCACACAG ATGACTGGTT TGGCACGGAG AACATGGATG
    TCCTCGTAAG CTGGACGAAA AACTTATGTT CCAACAAGGA TTTGCGTAGC
    TGCAGTGTAC TCGACATAGG AACTGGGAGC GGTCGACTCT CGCAACAGCT
    TGCAAAGCAA GGGTTCTCTG ATCTGACTGG GATCGACCAC AGTGAAGGTG
    CAATTGAGGT TGCTCGTAAT CTTGCTATCC GTGATGGGTT TGAGCACATT
    AATTTCTTGG TTGATGATGT GTTAGAGTCA AAGTTGGAGA GGAGATTTGA
    ACTTGTGATG GATGAAGGAA CTCTGGACAC GATTGGGTTG CACCCCGATG
    GACCTGTAAA GAGAATGATG TATTGGCAGT CGGTTGCAGG GCTGGTTTCT
    CCTGGTGGCA TACTGGTCAT CACATCATGT AGCAGAACCA AGGATGAGTT
    GGTCCAGGAG GTAGAGAGCT TCAACCAGAG AAAGCTCAGT GCTATGGGCT
    CCGAAGGTGC GCAGGCCAGT GATACTGCGG TGTTCAAGTA CATCGACCAT
    GTCCAAACGT ACCCCATCGT GGATAGTTCC TGCATCACGA CCGTTGCTTT
    CTCGCATAGC TGAAACATAT ATGTATGCTC TCTCTTTTTC TCCCTAACTT
    TGCCATCCCA GTGTGTATCC CCTTTACCCT AGTTCTCTTC GGGTGATAGT
    CTACTTTGCC AGATAGGTTA TTCAGTTGTA ACGTTGCTTT GTTACGTCTT
    GAATTCTTGA TGGATGTACT CTTTTGAAAG CGTGACAAGC AACACTATTA
    CACC

    Gene models with high sequence identity

    1. AT1G66680.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 1e-67; Score: 253.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SSF53335 1.2e-25
    HMMPanther PTHR12843 2.60000517657743e-46
    Gene3D G3DSA:3.40.50.150 0.0000000000000569999708784002
    HMMPfam Methyltransferase small 0.000015

    See the detailed result >

    AT1G66680.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Curator Summary
    unknown function
    Computational Description
    AR401; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 12 (InterPro:IPR013217); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G60910.1); Has 1054 Blast hits to 1053 proteins in 391 species: Archae - 16; Bacteria - 384; Metazoa - 157; Fungi - 144; Plants - 125; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR