K21111

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21111

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21111

Determination of introduced cDNA(s)

  • J023037P03 - Rice Full-length cDNAs - Original: J023037P03

    full reading [+] show sequence

    Nucleotide sequence: J023037P03 - full reading 
    GTATTTTTCT TGTTTATTCT GATCGTCCAC AAGTAATGCC ATTGGTATTG 
    CAGTAGCAAT GATTGATTTA TGCCACTGAA TATTTTTTTT GCCGAACTTT 
    CTATTATCAC TGAGGGAATT GCTTGTTTTA GATCTAAATA GTTTTCCGTA 
    TAAAGACATG TTAAACTTCT TGATCATCAT GCATTTATGA TGCATCCTTT 
    CCCAATAGTT TCTTTCCCTC CTCTATTTTA CTTGCTACTG TATATGTGAA 
    GCTCTGGACG TGTCTGAGAT GTATCTTTAT TGCGCTCTTC ATATGCGCTC 
    GTAGATAACT AACTATCTAG ATAAGATATA CTGGGCTTGT ATTTTGGGAT 
    CCGATCTTTT AAACAATGTA TTGTGCTGTG GCCTTTGGAT TCATATTACT 
    ACTTGTTGTG CATTTATGGC AGGAAGAAGA AGGCAGTTCA CAAGACTACC 
    ACCACTGATG ACAAGAGGCT TCAAAGCACC TTGAAAAGAG TAGGAGTGAA 
    CAACATTCCT GGTATCGAAG AGGTCAATAT CTTCAAGGAT GATGTGGTTA 
    TCCAATTTCA GAATCCAAAA GTGCAAGCAT CCATTGGTGC AAATACATGG 
    GTAGTGAGTG GAACACCACA GACGAAGAGT AAGTCATTGC TTAAGATCTT 
    GCGCACTGAT TGTTGTGTAG CCTCATGTTT AGTGGTTAAC ATGAATGAAT 
    AGGTTGAAAT ATCTTCTCTT GTTTGTGTTG AATTACATCC GGCAAAAAAT 
    CTTGAGATGA ACAAACCCTT TAAACGCAAA TTTGCATCTG CGTCGTTGAC 
    CCTATGTTAT TCTTCAATCC TGCATAATGG TGTTCTCATC TTTGGCTTTC 
    TAATTTTGAC AGAGCTGCAA GATCTGCTTC CAACAATCAT CAACCAGTTG 
    GGACCTGATA ACCTGGACAA CCTCAGGAGG CTTGCTGAGC AGTTCCAGAA 
    GCAGGTACCC GGTGCTGAGG CTGGTGCCAG CGCAGGTAAC GCTCAGGACG 
    ACGACGATGA TGTCCCTGAG CTTGTCCCTG GAGAGACGTT CGAGGAGGCT 
    GCAGAGGAGA AGGAGCCTGA GGAGAAGAAG GAAGCGGAGG TGGAAGAGAA 
    GAAAGAGTCG TCCTAGTTTT GTTCATCGCC GTCGTCTATT ATTGTTGTGA 
    AGGGTTGTTG GTTCAATGTT ACCCCCTACC ATGCCTGGGA CGTGCTCTCC 
    TATGGACTCC GACCTGCCTT ACTCGTTTCC ATGTGGGCCG GTTTTGTCTT 
    GTACGAGGAT TTGGTCCAAT CCAACGGTGG AATTGAGTTT TACGACAGTT 
    AAATTATGCT TCCAATTCGC AAATGTTTTA TACC

    Gene models with high sequence identity

    1. AT1G73230.1 [+] show detail - Nascent polypeptide-associated complex NAC
      E-value: 2e-30; Score: 130.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Nascent polypeptide-associated complex NAC 2.8e-21
    HMMPanther TRANSCRIPTION FACTOR BTF3 2e-27
    HMMPanther TRANSCRIPTION FACTOR BTF3 0.0000001
    ProfileScan Nascent polypeptide-associated complex NAC 15.914

    See the detailed result >

    AT1G73230.1

    Model type
    Protein coding
    Short Description
    Nascent polypeptide-associated complex NAC
    Computational Description
    Nascent polypeptide-associated complex NAC; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: basic transcription factor 3 (TAIR:AT1G17880.1); Has 832 Blast hits to 832 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 423; Fungi - 174; Plants - 145; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR