K21119

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21119

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21119

Determination of introduced cDNA(s)

  • J033082E20 - Rice Full-length cDNAs - Original: J033082E20

    full reading [+] show sequence

    Nucleotide sequence: J033082E20 - full reading 
    GGTTGTACGC GGACGACTCA ATCGGTTAGC TCGCTTCGTC GTCCACCGTC 
    TCCCTCGGTC ACCGTCGCCG CGCACGACTC CCATCCATGG CGATCGAGCT 
    CTGCCCATTT AAGCCCGGGG CGCCTCTCTT CGAGGACTTG CAAACGCTTG 
    CTGCAAGGAT TGGATCCTCT GGCTTCTGTT GATTTGGGGA GCTTTTCATC 
    GTCTCGACCG AACGGCCAGC CGCCGAGATC GAGGAAGGAG GAGATCGAAG 
    GGCAGAGTGA TTTGGCAGCG GTGGACATGG ATGTGAGGTT TGGGCCCGAG 
    GAGCAGATCG TGTGGCCGGC TTCTGTTCTT GCTGGGATCC TCATGTGCGC 
    AGCGGTATAT GATATAACTC GTGAAGTTAG CTCCCGGTGC TACAAGGGTT 
    ATAATGGACT GAATGAATTG CACAAACTTG AGTGGAACAA CAGGGGATTC 
    TCTACCTTCC ACGCATTAGT TGCTGCTGTA GTCTCTTTTT ATCTGCTGGT 
    GATATCTGAC CTCTTCAGTA AGGACGTCCA TGGTGCCATC ATAATTGATC 
    GAAAATCATG GATGTCTGAT GCCATGTTTG GTGTATCCCT GGGCTACTTC 
    TTGACAGATT TGTTGATGAT CCTCTGGCAT TTCCCTTCTC TAGGAGGAAA 
    GGAATATCTC TTGCATCATG GATTGTCCAT GTATGCAATC TCTCTTGCTC 
    TGTTGAGTGG CAAAGGACAC GTGTACATCC TCATGGTCCT CATCACTGAA 
    GCAACCACAC CCTTCGTGAA CCTCAGATGG TACCTTGATC TTGCAGGCCG 
    GAAGGACTCC AAGCTTTACC TGTACAACGG GGTGGCACTG TTTGCTGGAT 
    GGCTGGTTGC TCGCGTCATA CTGTTCGTAT ACTTCTTCGC TCATGTGTAC 
    CTTCACTTCG ACCAGGTGAG GACGGTGTTC CCGCTAGGGT TCTACAGTAT 
    GATGGCGGTG CCGCCGGCGA TGTCGGCGAT GAACCTCCTC TGGTTCCGGA 
    AGATCTGCAA GGGGATGGTC AAGGCCATGT CCAGCGCCAA CCGAAGTCAA 
    TGCGTCAAGA CAGATTAGGA CTTGGGTAAA AGGAGATGCA ACGCTGTCTG 
    GAAGCCAAAT GCTTACTAGC TTGCTTGTTT GATGATTAAC TAAACTGTAA 
    TCAATCAATT GATTATTTGA AAACC

    Gene models with high sequence identity

    1. AT4G10360.2 [+] show detail - TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
      E-value: 3e-79; Score: 292.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam TRAM/LAG1/CLN8 homology domain 3.6e-34
    HMMSmart TRAM/LAG1/CLN8 homology domain 1.3e-46
    ProfileScan TRAM/LAG1/CLN8 homology domain 38.304
    HMMPanther CT120 PROTEIN 0.00034

    See the detailed result >

    AT4G10360.2

    Model type
    Protein coding
    Short Description
    TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
    Computational Description
    TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT1G31300.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR