K21125

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21125

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21125

Determination of introduced cDNA(s)

  • J033046L15 - Rice Full-length cDNAs - Original: J033046L15

    full reading [+] show sequence

    Nucleotide sequence: J033046L15 - full reading
    GTGCCGAGCC AGAGTCAACC ACGCCCGCAC AACGCGAAAA CACCGCGTTT 
    CCCCCACCAT TTCCGCCCGA AATCAACCGG GCCAAGAAAA AAAAAAAAAA
    ACAGCACACC GCCGACGAGA TGCGCCTCCA CCTCGCCCTC CTCGCCGCGC
    TCCTCACCCT CGCCGCCGCC GCCCAGCCGC CATTCCGCGG CTACTACTAC
    CTGCTCGACT GCGGCGCCGC GGCGTCCACC ACCGACAGCC GCGGCCTCGA
    GTGGCTCCCC GATGGCGGCT ACGTCACCGG CGGCGAGCCC CACCAGCTCC
    CCGACCAGGG CCTCCTCGAC CCGGCGCTCG CCACCCGCCG TGACTTCCCG
    CACGAGCCCG GGAAGAAGTT CTGCTACGAG CTCCCCGTCG ACCGCAACCG
    CCGCTACCTG CTCCGCCCCA CCTTCTTCTA CGGGGCCTCC TCGCCGCCGC
    CGCCCGTCTT CGACCTCATC GTGGACGGCA CCTTCTGGAC CGCCGTCAAC
    ACCACCGACG ACGTCCTCGC CGGCAGCGCC TCCTACTACG AGGCCGTCTT
    CGGCGCGAGC GGCAGGAACA TGAGTTTCTG CCTCGGCGTG AACCCGGACT
    ACACCAGCGC TGGCCCTTTC ATCAACGCGC TGCAGGTGAT CCAGCTTCAC
    GATTCGGTGT ACAACGCCAC GAACTTCACT ACCAGCGCCA TGGGGCTCAT
    TGCGCGTACC AAGTTTGGCT CCACCGACGG TGTTGAGAGG TACCCTAATG
    ACACCTTCAA TCGGTATTGG CAGCCATTCC CAGACAGTAA ACATGCAGTC
    AGTAGTACCC ACAATGTCAC ATCGGCTGAT TTTTGGAATC TTCCACCTCC
    TGGGGTGTTT AATACAGCTT TGGTGGCAGA ACAAGATGCA CCCTTGGTGC
    TGCAATGGCC TCCAATACCT CTCCAGAATG ATAGCTATTA TGTTGCTCTT
    TATTTTGCTG ATACAGTCTC TGAGAGTTCA AGGACCTTTA ATGTATATAT
    AAATGATTAC AGCTTCTATG AAGGCCTAAC AGTAACATCA GCTGGTCTTT
    CTGTCTTTGC AACACAATGG ATTCTCTCAG GCTTGACCAG AGTTATTTTG
    GCTCCTATTT CTGGCCTTCC TCCACTTATC AATGCTGGTG AAGTCTTTGG
    ACTTTTCCCA CTAGGAGGAT ACACATTTCC TCGGGATGCA CATGCCCTGG
    AAGCTATTAA GAGAAGCCTT CAAAATATAC CTGATGATTG GAATGGAGAT
    CCATGTATGC CTCATGGATA TGCTTGGACT GGAGTTACAT GTGATAAAGG
    CCAAATACCA CGTGTCATCT CACTGAACTT TTCAAGTATG GGCCTCTCTG
    GATATCTTTC ATCTGATATT GCAAGGCTCA CCGCTCTGAC TGATATATCT
    TTTGCAAACA ATAGCTTGTC TGGACCTATT CCAAATCTCA GCAACCTGAG
    GAATCTCACA AGACTGCACC TGCAGGACAA CAAATTAAAT GGAACAGTAC
    CGCAGACACT GGGGATAATC ACATCTTTGC GTGAACTATT CTTGCAGAAC
    AATGAACTGG ATGGAGCAGT TCCACTGAAC TTGCTGTTGA ATCAAGGTTT
    GACTTACCAG TTTCTTCCGG GGAACAACTT TTTTCCAAGA CCACCTCGCT
    GACAATCAGG CATTTTATTT GCAACCAATT GCTCCCAACT GTACTCAACA
    GAATTCAAAA CTAGGAGGAC AATTTGTCGA TTCTTTGGGT GGCTACACCA
    AGATTTTGTT GCCGTTCTGT ACATGAAAGC AAGTTTACAG TGTCAGATGA
    TTTGGACCTA GTCAAAGCCG TTAGCAACGG TAGTGAATAG TAGAACTGAT
    TGTACAGTTT GTTGTAGGTT ACATTGTCAA TATATTCAGG AGGAAGGGTT
    GTGATACCCA AGAAGTGTTT GATGATCTTT CGGGACATTG CCCTTGAAAC
    TAGAACCGGA TACTGTACTG TGAGGCTGTG AAAGGGGACA CAATATATAT
    GGTCTACGTC TTTTTTTTTC TTTTTGGTGC TTC

    Gene models with high sequence identity

    1. AT3G05990.1 [+] show detail - Leucine-rich repeat (LRR) family protein
      E-value: 8e-125; Score: 444.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily L domain-like 7.9e-25
    Gene3D no description 3e-22
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.6e-19
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 4.9e-06

    See the detailed result >

    AT3G05990.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat (LRR) family protein
    Computational Description
    Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G19230.1); Has 48781 Blast hits to 12236 proteins in 453 species: Archae - 4; Bacteria - 457; Metazoa - 323; Fungi - 23; Plants - 45747; Viruses - 0; Other Eukaryotes - 2227 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR