K21139

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21139

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21139

Determination of introduced cDNA(s)

J033148L16 - Rice Full-length cDNAs - Original: J033148L16

full reading [+] show sequence

GGGAAGGCCT CGTCCTCGTC CAAATTAGGC CCACAAGTAG GTGTCCGGAG 
CTTACAAGCG AAGCGAAGCT GCGGTTTCAA GCGGCCGCCG GCTAATCCTT 
GCGCCGCCGC CGCCCGCCGC CCGCCGCCAT GATTCACCTC CGGAGGAGCT 
TCCTTTCTCG CCTCCTCCAT CCACCGTGTC CCACCCCGGC CAATCCCCTC 
CCCCTCCACC GCCTCCTCTC CAGCGCTGCC GCCGCCGCGC CCATCCCCCC 
GGAACCCTTC GCCGTCGAGG ACTACCTCGT CGACTCCTGC GGCCTGACGA 
GAGCCCGAGC CAAGAAGGCC TCCGGGAAGC TCTCCCACCT CAGGTCCCCC 
TCCAACCCCG ATGCCGTCCT CGCCTTCCTC TCCGGCCTCG GCCTCTCCCG 
CCCGGACATC GCCGCCGTGG TCGTCAACGA CCCGCTCTTC ATCTGCGCCA 
GGGTGGACAA GACGCTGGCC ACCCGCGTCG CCGAGCTCAC CGACCTCGGC 
CTGTCCCGCT CCCAGATCGC GCGCCTCATC CCGGTGGTCC GCAGCCTCTT 
CCGCTGCAAG TCGCTCGCCC CAAGGCTCGC CTTCTTGCTC ACCGTGTTTG 
GCTCCTTCGA CAGGTGCCTC GAGGTTATCA AGACCAACTA TGGCGTCCTT 
AGCTCCAACG TTGAGGCGGT CATCAAGCCC AACCTCGCCG TACTCAAGGA 
ATGCGGGATA TCAATAGCGG ATAGGCCCTC ATACGCGTTC GCATCGCGGG 
TGATCAGCAG GCCTACTAAG CACCTGGAAG AAGCTGTGGT GCTTGCTAAC 
GAGTTTGGAG CTAAGCAGGG AACTCGGGTG TTTACTAATG CGGTCATGAT 
TTTTGGAATC CTCGGACAGG AGAAGCTCGC CAAGAAGTTG GAGTTCTTCA 
AGAAGCTTGG TTGGTCACAG GACGATTTGT CATTGGCGGT GAGGAGCATG 
CCACACATCC TAGCCATGAA GGAAGAAAGG ATGCGTCGAG GTATGAAGTT 
CTTGACCGAG GATGTTGGTC TAGAGATACC ATACATTGCA CGAAGGCCTG 
CACTCACGAT GTATAGCATT GAGCGCCGGT TGTTGCCACG GCATTGCTTG 
ATCAATGTTC TCAAGGGGAA CGGATTGCTC AAGGCCAATT ATGACTTCTA 
TAATATCTCT GTGATTAGCA ACGATGATTT CATGGAAAAA TTCGTGCAAC 
CATATGTGGA GAGTGTTCCA GGCCTTGGTG ATGCATATGC TTCTAGCTGT 
ACTGGATGTG GAGTGCACCA GTTGAAGCTG CTCTCAAAGC GTAAGACAAA 
GTGCTGATGT TTCTTCTAGT AATACCAGCA AGTTGGGACA ATTTTAAGGT 
TAGTTTATCA CTTTGATTCA TTCACTTCAG GAGCCAAATG AAATTGGGCT 
TTGCTCTCAA CAAGCCAAAC TAAGATTTGG TCTTGATTAA TGGTGTCACT 
ATGCCATTCA AAGACTGAAC TTTCTATTAA ATGGATTAGA TGAATCTTAA 
TGGATTGAGC TGACATATTT TGTAGCACT

Gene models with high sequence identity

AT5G07900.1 [+] show detail - Mitochondrial transcription termination factor family protein
E-value: 5e-28; Score: 122.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Mitochodrial transcription termination factor-related	6e-22
HMMSmart	Mitochodrial transcription termination factor-related	4.8
HMMSmart	Mitochodrial transcription termination factor-related	1.4
HMMSmart	Mitochodrial transcription termination factor-related	94
HMMSmart	Mitochodrial transcription termination factor-related	72
HMMSmart	Mitochodrial transcription termination factor-related	360

See the detailed result >

AT5G07900.1

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G21150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR