K21208

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21208

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21208

Determination of introduced cDNA(s)

  • J013001B10 - Rice Full-length cDNAs - Original: J013001B10

    full reading [+] show sequence

    Nucleotide sequence: J013001B10 - full reading 
    GACAGTCTCC CCCTTTCTGA ACACAGCACC ACCCCTTCTG CTGCATCTCC 
    CACCTCCCTC TGAATTGTGG GCCTGAGGCG ATGGCGGCGC TCGCCCCGTC 
    CAAGATGCTC GGCACCCGGC TCAACTTCGC CGGCTCCTCC CGCTACGCCA 
    CCGCGGCACC GACCACCGGA GCGCAGAAGA TCGTCTCCCT CTTCAGCAAG 
    AAGCCCGCCC CGAAGCCCAA GCCCGCCGCC GTCACCTCCT CGAGCCCCGA 
    CATCGGCGAT GAGCTCGCCA AGTGGTACGG CCCTGACAGG AGGATCTTCT 
    TGCCGGAGGG TCTCCTGGAC CGCTCAGAGG TGCCGGACTA CCTCAACGGA 
    GAGGTCCCCG GAGACTACGG CTACGACCCT TTTGGCCTCA GCAAGAAGCC 
    AGAGGACTTC TCCAAGTACC AGGCCTATGA GCTGATCCAT GCCAGGTGGG 
    CGATGCTCGG CGCCGCTGGG TTCATCATCC CCGAGGCCTG CAACAAGTTT 
    GGCGCAAACT GCGGCCCCGA GGCCGTCTGG TTCAAGACCG GCGCCCTTCT 
    CCTGGACGGC AACACCCTCA ACTACTTCGG CAACAGCATC CCCATCAACC 
    TCATCGTCGC CGTCGCCGCC GAGGTCGTCC TCGTCGGCGG CGCCGAGTAC 
    TACCGGATCA TCAACGGCCT GGATCTGGAG GACAAGCTCC ACCCAGGTGG 
    CCCATTCGAC CCGCTGGGGC TGGCGAGCGA CCCGGACCAG GCGGCGCTGC 
    TGAAGGTGAA GGAGATCAAG AACGGGCGGC TGGCCATGTT CTCCATGCTG 
    GGGTTCTTCA TCCAGGCCTA CGTCACCGGC GAGGGCCCCG TCGAGAACCT 
    CTCCAAGCAC CTCAGCGACC CCTTCGGCAA CAACCTGCTC ACCGTCATCT 
    CCGGCGCCGC CGAGAGGACG CCCAGCCTGT AAACATCTCG CCGCCGGCGA 
    CGCTGGCTGG CCTCAAGTTA ATTTTAATCT TACCCGGGAA GAAGAAGGGA 
    GGAGTTTGAG AAGGGTGGAA GAATGTGTTA AATGTACGTG TAAATTATCG 
    TCGAGTTGGG AGATGAATTT GAAAACCTGT TCATTCTGAT CTTCTGATAG 
    G

    Gene models with high sequence identity

    1. AT4G10340.1 [+] show detail - light harvesting complex of photosystem II 5
      E-value: 3e-116; Score: 415.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Chlorophyll a-b binding protein 1e-61
    HMMPanther Chlorophyll A-B binding protein 1.5e-114
    HMMPfam Chloroa_b-bind 1.4e-44

    See the detailed result >

    AT4G10340.1

    Model type
    Protein coding
    Short Description
    light harvesting complex of photosystem II 5
    Curator Summary
    photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus
    Computational Description
    light harvesting complex of photosystem II 5 (LHCB5); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis, nonphotochemical quenching; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2360 Blast hits to 2295 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2013; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR