K21210

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21210

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21210

Determination of introduced cDNA(s)

  • J023028K03 - Rice Full-length cDNAs - Original: J023028K03

    full reading [+] show sequence

    Nucleotide sequence: J023028K03 - full reading
    GTTTCCGTCC ATTCCCCTCC TGCGTACTTC CGCCGCGCGG CTCGCCGACG 
    CACTCATCCC GCTGCCGCGC GTCGCCGCAT CCCGTCCACG GCCGCCCGCC
    TCCTCGACTA CCCACAGTCG TCTTGCTCGC ACCTCCGCCG CTGCGGTGGC
    CGCCGGTCCC GGAGGCGGCC TCCGATTTAA TGGAGAAGTC CTACGCGTCG
    GCGAGCTCCG GCGAGCTCGG CGTCGTGGCG GGTGGTGGGG GCAGGTCGGT
    GCGGGTTATA CCACTGCGGC ATCCACAGGA GGCGGTCGCT GGGTCCTCGC
    CGTCGTGGTG GTCCGTGGTG ATGGTGAAGG CGCGGGGAAT GGGGCCGCGG
    GATTGGGCGG AGGCGGCTCT GCCCTGCTTG TCGTGGATGC GGACGTACAG
    GTTGAAGGAG GATCTGCAGG CCGACCTCGC CGCTGGCATC ACCGTCGGCG
    TCATGCTCGT GCCCCAAGCA ATGTCATATG CAAAGTTGGC TGGGCTTCAC
    CCAATATATG GGTTATACAC AGGCTTTGTC CCGCTATTTG TCTATGCAAT
    TTTTGGCTCA TCGAGACAGT TGGCAGTGGG TCCAGTGGCT CTTGTCTCTC
    TTCTAGTTTC TAATGTCCTC GGTGGTATTG TTGATTCATC TAGTGAGCTG
    TACACAGAAT TAGCCATATT ATTGGCATTC ATGGTTGGTG TATTAGAATG
    CTTGATGGGA TTGCTAAGGC TCGGTTGGCT TATTCGATTT ATTAGCCATT
    CTGTCATATC TGGCTTCACT ACTGCTTCAG CTATTGTAAT TGGTCTGTCA
    CAGATCAAGT ATTTCTTGGG CTACAGCGTT ACGAGAAGCA GCAAAATTAT
    ACCACTTATT GAGAGTATAA TTGGAGGAAT AGATCAGTTC TCCTGGCCAC
    CATTTGTAAT GGGATCAAGT TTTTTTGTTA TTCTTCTCAT AATGAAAAAT
    CTAGGAAAAT CGAATAAAAG ACTGCGTTTC CTAAGAGCTT CTGGTCCCCT
    TACAGCAGTT GTGTTTGGAA CAATTTTTGT GAAAATTTTC CATCCATCTT
    CCATATCAGT GGTAGGTGAA ATACCGCAAG GTCTTCCCAA ATTCTCCATT
    CCTCGAGGAT TTGAGCATCT GATGTCCCTA ATGCCAACTG CAGTACTTAT
    CACTGGCGTC GCCATTTTGG AATCTGTTGG TATTGCTAAA GCTTTGGCTG
    CGAAGAATGG CTATGAGTTG GACCCCAATA AGGAGTTATT TGGGCTTGGT
    ATAGCAAACA TATGCGGTTC ATTTTTCTCT TCATATCCTG CTACAGGTTC
    CTTTTCTAGG TCAGCTGTGA ATCATGAAAG TGGAGCAAAA ACTGGTCTAT
    CTGGAATCAT AATGGGCATA ATAATTGGTG GTGCTCTCTT GTTTATGACA
    CCCTTGTTTA CGGATATACC TCAGTGTGCC TTGGCTGCAA TTGTTATTTC
    TGCAGTCACT AGCCTGGTAG ACTACGAGGA GGCTATCTTC TTGTGGAGTA
    TTGATAAGAA GGATTTCTTT CTATGGGCAA TCACATTCAT TACAACATTA
    ATTTTTGGTA TTGAGATTGG TGTTCTTGTT GGGGTCGGAT TCTCATTGGC
    CTTTGTAATC CATGAGTCAG CAAATCCTCA TATCGCCGTA TTGGGCCGCT
    TACCTGGCAC CACAGTGTAC CGAAATAGAT TGCAATACCC TGAGGCTTAT
    ACCTACAACG GGATAGTTGT TGTTCGAATT GATGCACCTA TCTACTTTGC
    CAACATAAGT TACATAAAAG ACAGGTTGCG TGAATATGAG CTTAATCTCC
    CAAATTCAAA CCGTGGACCT GATGTCGGAA GAGTGTACTT TGTGATCCTC
    GAGATGTCCC CTGTTACATA CATCGATTCA AGTGCTGTTC AGGCTCTCAA
    GGACTTGTAT CAAGAATACA GGGATCGCCA TATCCAGATT GCAATAGCGA
    ACCCAAACCG GCAGGTACAC CTGCTGCTTT CGAGATCGGG CATCATAGAC
    ATGATTGGTA CTGGGTGGTG CTTCGTGCGA GTGCACGACG CTGTGCAAGT
    ATGCCTCCAG AAGGTGCAGA GCTCATCATC AAGTTCCATA AAGCTGTCGC
    CACAGGCATC AGGGGACCTA GCTGACTCCG TTACCACTCC AAAGGTTCAA
    CAGCGGTATA GTTTTCTAAA GAACCTCTGG AAATCACAGG TTGGGGACGG
    GTGTACAGGT AGTGAGGTTC AACCGTTGCT ACGCCAAAAC CTTGTTTAAC
    ATTATGGCCG ACTACCTTTC TATTAGTATC TGTCTGCCTG TTTATATTTG
    ATGTACATGT ATGCATACAG TGTAAAGGAA AAAAAAGGAA TATGTTATTA
    CTCTCTTGCA ATTTTATATA GAGGAATTGA GATGGGGTTG TAAGTGGACA
    GTATATGTGC TGCCAACACA TTGGTTATCT ACACATAAGG ACGTAGAATA
    TGCTGTGTAC TGTACGGTGC CGCGGCTTGC CTATCGTGAG GAGTTGAAAT
    GTTCGCAAAA TTCTTGTTTA ACTTGTAAGT TTATGTATAT ACATTTTCCT
    AGGCATGTAA TAACAGCCGC TTTCCATCTG T

    Gene models with high sequence identity

    1. AT5G13550.1 [+] show detail - sulfate transporter 4.1
      E-value: 0; Score: 806.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Sulphate transporter/antisigma-factor antagonist STAS 5.5e-25
    HMMTigr Sulphate anion transporter 0
    superfamily Sulphate transporter/antisigma-factor antagonist STAS 1.1e-21
    PatternScan Sulphate anion transporter, conserved site 0
    HMMPfam Sulphate transporter 1.10000000000001e-86
    ProfileScan Sulphate transporter/antisigma-factor antagonist STAS 0
    HMMPanther PTHR11814 0
    Gene3D Sulphate transporter/antisigma-factor antagonist STAS 2.79999889404117e-06
    HMMPanther PTHR11814:SF9 0

    See the detailed result >

    AT5G13550.1

    Model type
    Protein coding
    Short Description
    sulfate transporter 4.1
    Curator Summary
    Encodes a sulfate transporter.
    Computational Description
    sulfate transporter 4.1 (SULTR4;1); FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: sulfate transporter 4;2 (TAIR:AT3G12520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR