K21210

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21210

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21210

Determination of introduced cDNA(s)

  • J023028K03 - Rice Full-length cDNAs - Original: J023028K03

    full reading [+] show sequence

    Nucleotide sequence: J023028K03 - full reading 
    GTTTCCGTCC ATTCCCCTCC TGCGTACTTC CGCCGCGCGG CTCGCCGACG 
    CACTCATCCC GCTGCCGCGC GTCGCCGCAT CCCGTCCACG GCCGCCCGCC 
    TCCTCGACTA CCCACAGTCG TCTTGCTCGC ACCTCCGCCG CTGCGGTGGC 
    CGCCGGTCCC GGAGGCGGCC TCCGATTTAA TGGAGAAGTC CTACGCGTCG 
    GCGAGCTCCG GCGAGCTCGG CGTCGTGGCG GGTGGTGGGG GCAGGTCGGT 
    GCGGGTTATA CCACTGCGGC ATCCACAGGA GGCGGTCGCT GGGTCCTCGC 
    CGTCGTGGTG GTCCGTGGTG ATGGTGAAGG CGCGGGGAAT GGGGCCGCGG 
    GATTGGGCGG AGGCGGCTCT GCCCTGCTTG TCGTGGATGC GGACGTACAG 
    GTTGAAGGAG GATCTGCAGG CCGACCTCGC CGCTGGCATC ACCGTCGGCG 
    TCATGCTCGT GCCCCAAGCA ATGTCATATG CAAAGTTGGC TGGGCTTCAC 
    CCAATATATG GGTTATACAC AGGCTTTGTC CCGCTATTTG TCTATGCAAT 
    TTTTGGCTCA TCGAGACAGT TGGCAGTGGG TCCAGTGGCT CTTGTCTCTC 
    TTCTAGTTTC TAATGTCCTC GGTGGTATTG TTGATTCATC TAGTGAGCTG 
    TACACAGAAT TAGCCATATT ATTGGCATTC ATGGTTGGTG TATTAGAATG 
    CTTGATGGGA TTGCTAAGGC TCGGTTGGCT TATTCGATTT ATTAGCCATT 
    CTGTCATATC TGGCTTCACT ACTGCTTCAG CTATTGTAAT TGGTCTGTCA 
    CAGATCAAGT ATTTCTTGGG CTACAGCGTT ACGAGAAGCA GCAAAATTAT 
    ACCACTTATT GAGAGTATAA TTGGAGGAAT AGATCAGTTC TCCTGGCCAC 
    CATTTGTAAT GGGATCAAGT TTTTTTGTTA TTCTTCTCAT AATGAAAAAT 
    CTAGGAAAAT CGAATAAAAG ACTGCGTTTC CTAAGAGCTT CTGGTCCCCT 
    TACAGCAGTT GTGTTTGGAA CAATTTTTGT GAAAATTTTC CATCCATCTT 
    CCATATCAGT GGTAGGTGAA ATACCGCAAG GTCTTCCCAA ATTCTCCATT 
    CCTCGAGGAT TTGAGCATCT GATGTCCCTA ATGCCAACTG CAGTACTTAT 
    CACTGGCGTC GCCATTTTGG AATCTGTTGG TATTGCTAAA GCTTTGGCTG 
    CGAAGAATGG CTATGAGTTG GACCCCAATA AGGAGTTATT TGGGCTTGGT 
    ATAGCAAACA TATGCGGTTC ATTTTTCTCT TCATATCCTG CTACAGGTTC 
    CTTTTCTAGG TCAGCTGTGA ATCATGAAAG TGGAGCAAAA ACTGGTCTAT 
    CTGGAATCAT AATGGGCATA ATAATTGGTG GTGCTCTCTT GTTTATGACA 
    CCCTTGTTTA CGGATATACC TCAGTGTGCC TTGGCTGCAA TTGTTATTTC 
    TGCAGTCACT AGCCTGGTAG ACTACGAGGA GGCTATCTTC TTGTGGAGTA 
    TTGATAAGAA GGATTTCTTT CTATGGGCAA TCACATTCAT TACAACATTA 
    ATTTTTGGTA TTGAGATTGG TGTTCTTGTT GGGGTCGGAT TCTCATTGGC 
    CTTTGTAATC CATGAGTCAG CAAATCCTCA TATCGCCGTA TTGGGCCGCT 
    TACCTGGCAC CACAGTGTAC CGAAATAGAT TGCAATACCC TGAGGCTTAT 
    ACCTACAACG GGATAGTTGT TGTTCGAATT GATGCACCTA TCTACTTTGC 
    CAACATAAGT TACATAAAAG ACAGGTTGCG TGAATATGAG CTTAATCTCC 
    CAAATTCAAA CCGTGGACCT GATGTCGGAA GAGTGTACTT TGTGATCCTC 
    GAGATGTCCC CTGTTACATA CATCGATTCA AGTGCTGTTC AGGCTCTCAA 
    GGACTTGTAT CAAGAATACA GGGATCGCCA TATCCAGATT GCAATAGCGA 
    ACCCAAACCG GCAGGTACAC CTGCTGCTTT CGAGATCGGG CATCATAGAC 
    ATGATTGGTA CTGGGTGGTG CTTCGTGCGA GTGCACGACG CTGTGCAAGT 
    ATGCCTCCAG AAGGTGCAGA GCTCATCATC AAGTTCCATA AAGCTGTCGC 
    CACAGGCATC AGGGGACCTA GCTGACTCCG TTACCACTCC AAAGGTTCAA 
    CAGCGGTATA GTTTTCTAAA GAACCTCTGG AAATCACAGG TTGGGGACGG 
    GTGTACAGGT AGTGAGGTTC AACCGTTGCT ACGCCAAAAC CTTGTTTAAC 
    ATTATGGCCG ACTACCTTTC TATTAGTATC TGTCTGCCTG TTTATATTTG 
    ATGTACATGT ATGCATACAG TGTAAAGGAA AAAAAAGGAA TATGTTATTA 
    CTCTCTTGCA ATTTTATATA GAGGAATTGA GATGGGGTTG TAAGTGGACA 
    GTATATGTGC TGCCAACACA TTGGTTATCT ACACATAAGG ACGTAGAATA 
    TGCTGTGTAC TGTACGGTGC CGCGGCTTGC CTATCGTGAG GAGTTGAAAT 
    GTTCGCAAAA TTCTTGTTTA ACTTGTAAGT TTATGTATAT ACATTTTCCT 
    AGGCATGTAA TAACAGCCGC TTTCCATCTG T

    Gene models with high sequence identity

    1. AT5G13550.1 [+] show detail - sulfate transporter 4.1
      E-value: 0; Score: 806.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Sulphate transporter/antisigma-factor antagonist STAS 5.5e-25
    HMMTigr Sulphate anion transporter 0
    superfamily Sulphate transporter/antisigma-factor antagonist STAS 1.1e-21
    PatternScan Sulphate anion transporter, conserved site 0
    HMMPfam Sulphate transporter 1.10000000000001e-86
    ProfileScan Sulphate transporter/antisigma-factor antagonist STAS 0
    HMMPanther PTHR11814 0
    Gene3D Sulphate transporter/antisigma-factor antagonist STAS 2.79999889404117e-06
    HMMPanther PTHR11814:SF9 0

    See the detailed result >

    AT5G13550.1

    Model type
    Protein coding
    Short Description
    sulfate transporter 4.1
    Curator Summary
    Encodes a sulfate transporter.
    Computational Description
    sulfate transporter 4.1 (SULTR4;1); FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: sulfate transporter 4;2 (TAIR:AT3G12520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR