K21213

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21213

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21213

Determination of introduced cDNA(s)

  • J023107P11 - Rice Full-length cDNAs - Original: J023107P11

    full reading [+] show sequence

    Nucleotide sequence: J023107P11 - full reading 
    GAATATAATC TCTCTCTCAC AGCTGCACAA GTGGTAGCTG GCTTACTCTA 
    ATTAACCTTG GTTGTAATCC ATGGCGAGCT GCAGCAAGTG GCTGGCCGGG 
    CTGATGCTGC TGGCGGCGGC GCTGGCGTGC TCGCTGCCGG CGGCGAGCCG 
    GGCGCAGCTG CAGGTGGGGT TCTACAACAC GAGCTGCCCC ACCGCCGAGG 
    CGCTGGTCCG GCAGGCCGTC GTGGCCGCCG TCGCCAACAA CTCCGGCCTC 
    GCCGCCGGCC TCATCCGCCT CCATTTCCAC GACTGCTTCG TCAGGGGGTG 
    TGATGCATCA GTGCTGATCT TCTCGCCGAA CGGCACGGCG GAGCGCGACG 
    CGGCGCCGAA CAACCCCAGC CTCCGGGGTT TCGAGGTGAT CGACGCCGCC 
    AAGGCCGCCG TCGAGGCGGC GTGCCCGCGC ACCGTCTCCT GCGCCGACAT 
    CCTCGCCTTC GCCGCCCGCG ACAGCGTCAA CCTCACCGGC AACTCCTTCT 
    ACCAGGTCCC CGCCGGCCGC CGCGACGGCA ACGTCTCCAT CGACACCGAC 
    GCCTTCACGC TCCCCGGGCC AAACCTCACG GCGACGCAGC TCGTCGACGG 
    CTTCAAGCTC AGGAACCTGA CCGCCGAGGA GATGGTCATC CTCTCCGGCT 
    CCCACACCAT CGGCCGCTCG CACTGCGCCT CCTTCCTCTT CAAGAACCGT 
    GAACGTTTGG CGAATGGGAC GATTAGCCCG GCGTACCAGG CGCTGCTGGA 
    GGCGCTGTGC CCGCCGACGA CGGGGCGGTT CACGCCGATC ACGACGGAGA 
    TCGACGTGAG CACGCCGGCG ACGCTGGACA ACAACTACTA CAAGCTGCTG 
    CCGCTCAACC TGGGCCTCCA CTTCTCCGAC GACCAGCTCA TCCGCAACGC 
    CACGCTCCTC CCCTTCGTCG ACGCCTTCGC CGCCAACGAG ACGCTGTGGA 
    AGGAGAAGTT CGTCGCCGCC ATGATCAAGA TGGGCAACAT CAACGTGCTC 
    ACCGGCGCCC GGGGGGAGAT CCGGCTCAAC TGCAGCGCCG TCAACCCGTC 
    CTCGTCGTCG TCGTCGTCCT CCGCCGGGAG GATGATCGAG ACCGTCTTCC 
    CCGGCGCCGG CGGTGAGGTC GCCGCGAGCT AAGCTATACC CTTGCTGACC 
    ATGTAATATA CGTCATATAT ATGATGATAA TGTAAAATTA ATAATGCATG 
    ACACGCACTT GCACTGTGTG TTGTACGGCC AGGGCAAGTG TGGTTGGTTG 
    ATGAAGGCTT TGTTTGCACC T

    Gene models with high sequence identity

    1. AT5G66390.1 [+] show detail - Peroxidase superfamily protein
      E-value: 8e-53; Score: 204.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 2.6e-55
    superfamily Haem peroxidase 5.8e-102
    ProfileScan Haem peroxidase, plant/fungal/bacterial 67.354
    FPrintScan Plant peroxidase 6.8e-53
    FPrintScan Plant peroxidase 6.8e-53
    FPrintScan Plant peroxidase 6.8e-53
    FPrintScan Plant peroxidase 6.8e-53
    FPrintScan Plant peroxidase 6.8e-53
    FPrintScan Plant peroxidase 6.8e-53
    FPrintScan Plant peroxidase 6.8e-53
    FPrintScan Plant peroxidase 6.8e-53
    FPrintScan Plant peroxidase 6.8e-53
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.2e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.2e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.2e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.2e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.2e-29
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    HMMPfam Haem peroxidase, plant/fungal/bacterial 6e-67

    See the detailed result >

    AT5G66390.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, hypocotyl, root, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G50990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR