K21225

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21225

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K21225

Determination of introduced cDNA(s)

  • J013115P09 - Rice Full-length cDNAs - Original: J013115P09

    full reading [+] show sequence

    Nucleotide sequence: J013115P09 - full reading
    GACGTTCGAA GCTTCCCCTG TCACTGTCCA TCCATGGTGG TGGTCAGACA 
    ACCCCAGCAC ACAAGAAATC TGCCATTTGC CCAGTCCACC GCTGGGTTGC
    AGTTTTTGAT GAAGAGATTG ACTTGACCTG AGCACCCTTC CGATTGTAAA
    TAGCAGTTTT TGTATTGCTG TTGGTTGAGT GATTGGGCAA TCATCCAATA
    CATATCTTGG CTTCTTGGCT GGACTCCAGT AACCGAGGTC GCGTGCCTCC
    GCTCGCTCGC TCGCTCATCG TCGTCGTCTT CCTCGGGGCC TCTCTCGTCG
    TGGAGCGGAG GCGTGCCGCG TAGCAGGGGG AATTCAACTG AGGTGAGAAA
    TGGGGGCAAA GGACTCCAAG CCCTCATACA GCTATTCTTC TTCATATGAT
    CATGGGAATT CATCATCGGG ATATAACTCG AGATACCCTG CATACCCTGC
    AAATGCATCT TCCAGTCAGA ACACAAGGTA TGCTCCTTCT ATGGAGAACT
    ATGTGCAGCC AGAAACGCAT GCCAGGTTGC AGAGGAAGTA CTCGAGGATT
    GGTGATGACT ACCGCTCTCT GAATCAAGTG ACTGAAGCTT TGGCACAAGC
    AGGTCTTGAA TCATCAAATC TTATTGTAGG CATTGATTTT ACAAAGAGCA
    ATGAATGGAC AGGTAAACTT TCCTTCAATC GCCGATGTCT GCATGATATT
    GGAAACACTC CAAATCCATA TGAGCAAGCA ATATCTATTA TTGGAAGGAC
    ACTTTCAGCT TTTGATGAAG ATAATTTGAT TCCTTGCTTT GGATTTGGTG
    ACGCATCAAC TCATGATCAG GAGGTATTCA GCTTTTATCC AGAGAACCGC
    CCATGCAACG GATTTGAAGA GGCATTAGAA AGATACAGAG AAATTGTTCC
    GACTCTTCGA TTAGCTGGAC CAACATCTTT TGCCCCGATG ATTGAAACAG
    CAATTGGTAT TGTAGACAGC ACTGGTGGTC AGTATCATGT TCTTCTGATA
    ATAGCCGATG GACAGGTTAC TCGAAGTGTT GATACACAGT CTGGGCAGTT
    AAGCCCGCAG GAGCGTGATA CGATTGATGC TATAGTAAAA GCTAGCCAGT
    TCCCCTTGTC TATTGTTCTT GTTGGGGTGG GTGATGGACC ATGGGACATG
    ATGCATCAGT TTGATGACAA TATACCTGCT CGCTCATTTG ACAATTTCCA
    GTTTGTGAAT TTCACGGACA TCATGTCAAA GAGCATAGCA GCTGACAGGA
    AGGAGGCAGA ATTTGCACTA TCCGCCTTGA TGGAAATCCC AACACAATAC
    AAGGCAACAC TTGATCTCCA ACTTCTAGGC CGTCGCCAAA GAATACAGCC
    AAGAATTCCT CTGCCGCCAC CTATGAGGAA TGCTTATTCG AGGTCTACTA
    GCTTTGACCA ACATTCTGGT GTTTATTCAC GATCTAGTAG CTTCGGCCCA
    CAAACAAGTG GCTTTCAGCA ATCTGAAAGC TTCAAACAGA GACAGCCTGT
    GGCTACCACT GCACCTGACA CTTATACCTC GGAAAGTTCT TTAGAAGGAA
    GACTTTTGTG CGCTATCTGT ATGGATAAAT CAAAGGATCT TGCATTTGGA
    TGTGGACATC AGACCTGTTA TGAATGCGGG AAGAATTTGG TGCGCTGCCC
    TATGTGCCAG CAGCATATAA CCACAAGGAT CAGGCTGTAC TGAGAAAACA
    AAAATGGATA TCCTGAAGTT TCTGAAGCCT GCAGAAACAG AATCTCCAAC
    ATCAGAAGAA ACTCCTGTGC AAAATTTATG AACCAGCCTA AATTGTACTG
    TTCTTTCGTC TTGTAATTGG TGGTTTACTA TTATTATTGC AGTGAGAAAT
    GTTTAGGCAG ATAGTGATCC ATATAAAAAG CTAAGGCACA CACTGTAGTA
    TTAACTACAG TAGTTATGTG AAGAAGAGGT ACACTAAATA ATGTACAGTA
    ATTAGCTTCT CTATTATACA TTCTCCTTTC TTTCCCTTGG

    Gene models with high sequence identity

    1. AT5G14420.4 [+] show detail - RING domain ligase2
      E-value: 2e-135; Score: 479.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart von Willebrand factor, type A 1.2e-07
    HMMSmart Zinc finger, RING-type 0.00034
    Gene3D no description 0.00055
    superfamily RING/U-box 1.1e-10
    superfamily vWA-like 5.3e-09
    HMMPfam Copine 4.7e-50
    HMMPanther COPINE 2.5e-118
    ProfileScan Zinc finger, RING-type 11.058

    See the detailed result >

    AT5G14420.4

    Model type
    Protein coding
    Short Description
    RING domain ligase2
    Computational Description
    RING domain ligase2 (RGLG2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase1 (TAIR:AT3G01650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR