K21225

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21225

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K21225

Determination of introduced cDNA(s)

  • J013115P09 - Rice Full-length cDNAs - Original: J013115P09

    full reading [+] show sequence

    Nucleotide sequence: J013115P09 - full reading 
    GACGTTCGAA GCTTCCCCTG TCACTGTCCA TCCATGGTGG TGGTCAGACA 
    ACCCCAGCAC ACAAGAAATC TGCCATTTGC CCAGTCCACC GCTGGGTTGC 
    AGTTTTTGAT GAAGAGATTG ACTTGACCTG AGCACCCTTC CGATTGTAAA 
    TAGCAGTTTT TGTATTGCTG TTGGTTGAGT GATTGGGCAA TCATCCAATA 
    CATATCTTGG CTTCTTGGCT GGACTCCAGT AACCGAGGTC GCGTGCCTCC 
    GCTCGCTCGC TCGCTCATCG TCGTCGTCTT CCTCGGGGCC TCTCTCGTCG 
    TGGAGCGGAG GCGTGCCGCG TAGCAGGGGG AATTCAACTG AGGTGAGAAA 
    TGGGGGCAAA GGACTCCAAG CCCTCATACA GCTATTCTTC TTCATATGAT 
    CATGGGAATT CATCATCGGG ATATAACTCG AGATACCCTG CATACCCTGC 
    AAATGCATCT TCCAGTCAGA ACACAAGGTA TGCTCCTTCT ATGGAGAACT 
    ATGTGCAGCC AGAAACGCAT GCCAGGTTGC AGAGGAAGTA CTCGAGGATT 
    GGTGATGACT ACCGCTCTCT GAATCAAGTG ACTGAAGCTT TGGCACAAGC 
    AGGTCTTGAA TCATCAAATC TTATTGTAGG CATTGATTTT ACAAAGAGCA 
    ATGAATGGAC AGGTAAACTT TCCTTCAATC GCCGATGTCT GCATGATATT 
    GGAAACACTC CAAATCCATA TGAGCAAGCA ATATCTATTA TTGGAAGGAC 
    ACTTTCAGCT TTTGATGAAG ATAATTTGAT TCCTTGCTTT GGATTTGGTG 
    ACGCATCAAC TCATGATCAG GAGGTATTCA GCTTTTATCC AGAGAACCGC 
    CCATGCAACG GATTTGAAGA GGCATTAGAA AGATACAGAG AAATTGTTCC 
    GACTCTTCGA TTAGCTGGAC CAACATCTTT TGCCCCGATG ATTGAAACAG 
    CAATTGGTAT TGTAGACAGC ACTGGTGGTC AGTATCATGT TCTTCTGATA 
    ATAGCCGATG GACAGGTTAC TCGAAGTGTT GATACACAGT CTGGGCAGTT 
    AAGCCCGCAG GAGCGTGATA CGATTGATGC TATAGTAAAA GCTAGCCAGT 
    TCCCCTTGTC TATTGTTCTT GTTGGGGTGG GTGATGGACC ATGGGACATG 
    ATGCATCAGT TTGATGACAA TATACCTGCT CGCTCATTTG ACAATTTCCA 
    GTTTGTGAAT TTCACGGACA TCATGTCAAA GAGCATAGCA GCTGACAGGA 
    AGGAGGCAGA ATTTGCACTA TCCGCCTTGA TGGAAATCCC AACACAATAC 
    AAGGCAACAC TTGATCTCCA ACTTCTAGGC CGTCGCCAAA GAATACAGCC 
    AAGAATTCCT CTGCCGCCAC CTATGAGGAA TGCTTATTCG AGGTCTACTA 
    GCTTTGACCA ACATTCTGGT GTTTATTCAC GATCTAGTAG CTTCGGCCCA 
    CAAACAAGTG GCTTTCAGCA ATCTGAAAGC TTCAAACAGA GACAGCCTGT 
    GGCTACCACT GCACCTGACA CTTATACCTC GGAAAGTTCT TTAGAAGGAA 
    GACTTTTGTG CGCTATCTGT ATGGATAAAT CAAAGGATCT TGCATTTGGA 
    TGTGGACATC AGACCTGTTA TGAATGCGGG AAGAATTTGG TGCGCTGCCC 
    TATGTGCCAG CAGCATATAA CCACAAGGAT CAGGCTGTAC TGAGAAAACA 
    AAAATGGATA TCCTGAAGTT TCTGAAGCCT GCAGAAACAG AATCTCCAAC 
    ATCAGAAGAA ACTCCTGTGC AAAATTTATG AACCAGCCTA AATTGTACTG 
    TTCTTTCGTC TTGTAATTGG TGGTTTACTA TTATTATTGC AGTGAGAAAT 
    GTTTAGGCAG ATAGTGATCC ATATAAAAAG CTAAGGCACA CACTGTAGTA 
    TTAACTACAG TAGTTATGTG AAGAAGAGGT ACACTAAATA ATGTACAGTA 
    ATTAGCTTCT CTATTATACA TTCTCCTTTC TTTCCCTTGG

    Gene models with high sequence identity

    1. AT5G14420.4 [+] show detail - RING domain ligase2
      E-value: 2e-135; Score: 479.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart von Willebrand factor, type A 1.2e-07
    HMMSmart Zinc finger, RING-type 0.00034
    Gene3D no description 0.00055
    superfamily RING/U-box 1.1e-10
    superfamily vWA-like 5.3e-09
    HMMPfam Copine 4.7e-50
    HMMPanther COPINE 2.5e-118
    ProfileScan Zinc finger, RING-type 11.058

    See the detailed result >

    AT5G14420.4

    Model type
    Protein coding
    Short Description
    RING domain ligase2
    Computational Description
    RING domain ligase2 (RGLG2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase1 (TAIR:AT3G01650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR