K21230

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21230

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21230

Determination of introduced cDNA(s)

  • J033099C09 - Rice Full-length cDNAs - Original: J033099C09

    full reading [+] show sequence

    Nucleotide sequence: J033099C09 - full reading 
    GATTGTCCTC CTCTCCACTA CACTACACTG TGCACTTCTG CAGGTTGCAA 
    TGGCCACCAT CCCGGAGGTG CCGGCGAGCG AGCTTATCCA GACCATGCCG 
    CGCGTCGGCA TGGGCACGGC GGCGTTCCCC TTCACCTCCT CGGAGGACAC 
    CACCGCCGCC ATGCTCCGCG CCATCGAGCT CGGCTACCGC CACTTCGACA 
    CGGCCAGGAT TTACGCCACC GAGGGCTGCG TCGGCGAGGC AGTCGCGGAG 
    GCCGTCCGGC GTGGCCTCAT CGCCTCCCGC GCCGACGTGT TCGTCACCTC 
    CAAGATCTGG TGCAGCGACC TGCACGCCGG CCGCGTCGTG CCGGCGGCGA 
    GGGAGACGCT CCGCAACCTC GGGATGGACT ACGTCGACCT GCTCCTTGTC 
    CACTGGCCGG TGAGCCTCAC GCCGGGCAAC TACGACTTCC CGTTCCCCAA 
    GGAGGTGATC CTGCCGTCGT TCGACATGGA GGGCGTGTGG CGCGGCATGG 
    AGGAGTGCCA CCGCCTGGGC CTCGCGCGCG CCATCGGCGT CAGCAACTTC 
    TCCGCCAAGA AGCTGGAGCA GCTGCTGTCG CTCGCCGCCG TGCGGCCGGC 
    GGTGAACCAG GTGGAGGTGA ACCCGATGTG GCAGCAGAGG ACGCTGCGGG 
    AGGTGTGCCG GCGGGAGGGG GTGCAGCTGT GCGGGTACTC GCCGCTGGGG 
    GCGAAGGGCA CGCCGTGGGG CAGCGCCGCC GTGATGGACT CCGGCGTCCT 
    GCAGGAGATC GCCGGAGCCA AGGGCAAGAC GCTTGCTCAG ATTTGTTTGA 
    GGTGGTTGTA CGAGCAAGGT GATGTTTTAT TGGTGAAGAC ATATAATGAG 
    AAGAGAATGA AGGAAAATCT GGACATTTTC AACTGGGAGC TCACAGATGA 
    AGAGAGGGAG AGGATCAGTC AGCTGCCCCA ACTGAGGGGC CTGCCTGGAT 
    TGGAATTCAT CTCTGACCAT GGGCCTTACA AATCAGTTGA AGATTTGTGG 
    GATGGTGACG TCTAGCAAGC TACTTAGATA CAGTGGAGTA TATATCTAAA 
    TAATCATGAT GGATCATGAT GTGGATCTAT CTTAATTATG TGCGGCAGGC 
    ATGGGCACGG CACCATTCCC GTACACGTTC TGCGATCAAT TAATGTATGG 
    ACCATACATG TATATTAATT GCTGTATACC TATCCACTTA TTTAAAACAC 
    GTCGACACGT TCACG

    Gene models with high sequence identity

    1. AT1G59960.1 [+] show detail - NAD(P)-linked oxidoreductase superfamily protein
      E-value: 2e-93; Score: 339.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ALDO-KETO REDUCTASE 1.5e-91
    HMMPanther Aldo/keto reductase 1.5e-91
    PatternScan Aldo/keto reductase, conserved site 0
    PatternScan Aldo/keto reductase, conserved site 0
    PatternScan Aldo/keto reductase, conserved site 0
    Gene3D Aldo/keto reductase 9e-85
    superfamily Aldo/keto reductase 1e-85
    HMMPfam Aldo/keto reductase 1.3e-55
    FPrintScan Aldo/keto reductase subgroup 2.3e-44
    FPrintScan Aldo/keto reductase subgroup 2.3e-44
    FPrintScan Aldo/keto reductase subgroup 2.3e-44
    FPrintScan Aldo/keto reductase subgroup 2.3e-44
    FPrintScan Aldo/keto reductase subgroup 2.3e-44

    See the detailed result >

    AT1G59960.1

    Model type
    Protein coding
    Short Description
    NAD(P)-linked oxidoreductase superfamily protein
    Computational Description
    NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G59950.1); Has 18939 Blast hits to 18918 proteins in 2314 species: Archae - 331; Bacteria - 12289; Metazoa - 1736; Fungi - 1658; Plants - 1296; Viruses - 0; Other Eukaryotes - 1629 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR