K21231

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21231

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21231

Determination of introduced cDNA(s)

  • J013072N20 - Rice Full-length cDNAs - Original: J013072N20

    full reading [+] show sequence

    Nucleotide sequence: J013072N20 - full reading 
    GACTAGATAG GATTAAGTTT CAAGAGTTAA TTTCTTGTAC TCTTGGGCGA 
    TCCATGCTGT CAAATCAGCA ACTAACGAGG CATAATCTCG ATCACTAGCT 
    CTGATCTGAT CTTCAGCTAG CGCCGGCGAG CTGCAGAGGT CTCCATCCAT 
    GGCGCCGGCG GTCAGTGCAT CGCAGGGTGT CATCATGCGG TCCCTGACGA 
    GCAAGCTCGA CTCGCTGCTG CTGCAGCCGC CGGAGCCGCC GCCGCCTGCG 
    CAACCGTCGT CGCTGCGGAA GGGGGAGAGG AAGAAGATCC TCCTCCTCAG 
    AGGCGATCTC CGACACCTGC TAGATGACTA CTACCTCCTC GTGGAGCCGC 
    CGTCAGACAC CGCGCCACCG CCAGACTCGA CGGCGGCGTG CTGGGCTAAG 
    GAGGTTCGCG AGCTCTCCTA CGACGTCGAC GACTTCCTCG ACGAGCTAAC 
    GACCCAGCTC CTCCACCACC GCGGCGGCGG CGATGGCAGT AGCACTGCTG 
    GTGCCAAGAA GATGATCAGC AGCATGATCG CCCGGCTTCG AGGGGAGCTT 
    AACCGGCGGC GGTGGATCGC CGACGAGGTC ACCCTGTTCA GCGCCCGCGT 
    GAAGGAGGCC ATTCGCCGCC AGGAGAGCTA CCATCTTGGC AGGCGCACCT 
    CGAGCTCGAG GCCGAGAGAA GAAGTCGACG ACGACGATCG CGAGGACTCC 
    GCCGGCAACG AACGCCGCCG GTTTCTGTCG CTGACGTTCG GGATGGACGA 
    CGCTGCTGTG CACGGCCAGC TCGTTGGTAG GGATATTTCG ATGCAAAAGC 
    TCGTCCGGTG GCTGGCCGAC GGCGAGCCGA AGCTCAAGGT GGCTTCCATT 
    GTTGGATCCG GAGGTGTTGG CAAGACGACG CTGGCCACAG AATTCTATCG 
    TCTGCATGGC CGGCGGTTGG ATGCGCCGTT CGACTGCCGG GCTTTCGTGC 
    GGACGCCCCG GAAGCCTGAC ATGACGAAGA TCCTCACCGA CATGCTGTCA 
    CAGCTGCGGC CACAACATCA GCATCAGTCT TCGGATGTTT GGGAGGTTGA 
    TCGACTCCTT GAAACTATCC GGACGCATTT GCAAGATAAA AGGTACTTCA 
    TCATAATTGA AGATTTATGG GCTTCATCAA TGTGGGATAT TGTTAGCCGT 
    GGTTTGCCTG ATAATAATAG TTGCAGTAGA ATACTAATAA CAACAGAAAT 
    TGAACCTGTA GCTTTGGCAT GCTGTGGATA TAACTCAGAG CACATTATTA 
    AGATTGATCC ACTGGGTGAT GATGTCTCAA GTCAATTGTT TTTCAGTGGA 
    GTTGTTGGCC AAGGAAATGA ATTTCCTGGA CATCTTACTG AAGTTTCTCA 
    TGACATGATA AAAAAATGTG GTGGCTTGCC ACTAGCAATA ACTATAACAG 
    CCAGACATTT TAAAAGCCAG CTGTTAGATG GAATGCAGCA ATGGAATCAC 
    ATACAAAAAT CATTGACTAC TTCCAATTTG AAGAAAAATC CTACTTTGCA 
    GGGGATGAGG CAAGTACTCA ACCTTATTTA CAATAATCTT CCTCATTGTT 
    TGAAAGCATG TCTGTTATAC CTTAGCATCT ACAAAGAGGA CTACATAATT 
    AGGAAGGCCA ACTTGGTGAG GCAATGGATG GCTGAAGGTT TCATCAATTC 
    CATAGAAAAT AAAGTCATGG AAGAAGTTGC AGGGAACTAT TTTGATGAAC 
    TTGTTGGTAG GGGCCTGGTC CAACCAGTAG ATGTTAACTG CAAAAATGAG 
    GTATTGTCAT GTGTAGTGCA CCACATGGTA TTAAATTTCA TCAGGTGTAA 
    GTCAATAGAG GAGAATTTCA GCATTACATT GGATCATTCT CAGACGACAG 
    TAAGACATGC TGACAAGGTT CGCCGACTCT CGCTTCACTT CAGCAATGCA 
    CATGATACAA CACCACTAGC AGGTTTGAGA CTCTCACAAG TTCGATCGAT 
    GGCATTTTTC GGACAAGTCA AGTGTATGCC TTCCATTGCA GATTATAGGC 
    TTCTTCGAGT TCTGATTCTT TGTTTTTGGG CTGATCAAGA GAAAACAAGC 
    TATGACCTCA CAAGCATTTC TGAACTGTTA CAACTGAGAT ATCTGAAGAT 
    AACAGGTAAT ATCACAGTTA AACTTCCAGA GAAGATCCAA GGACTACAAC 
    ACTTGCAGAC ACTGGAAGCA GATGCAAGAG CAACTGCTGT CCTATTGGAT 
    ATTGTTCATA CACAGTGTTT GTTGCACCTT CGTCTTGTAC TACTTGATCT 
    GCTCCCTCAC TGTCACAGGT ACATCTTCAC CAGCATCCCC AAATGGACTG 
    GAAAGCTCAA CAATCTCCGC ATTTTAAACA TTGCAGTCAT GCAAATTTCC 
    CAGGATGACC TTGACACTCT CAAAGGACTG GGATCTCTCA CTGCTCTTTC 
    GCTGCTTGTT CGAACAGCGC CTGCGCAAAG AATCGTCGCT GCGAATGAGG 
    GGTTCGGGTC TCTCAAGTAC TTCATGTTTG TCTGTACAGC ACCATGCATG 
    ACTTTTGTGG AAGGAGCAAT GCCGAGTGTG CAAAGATTAA ATCTAAGGTT 
    CAATGCCAAC GAGTTCAAGC AGTCTGACTC TAAGGAGACA GGGTTGGAAC 
    ACTTGGTCGC CCTTGCAGAG ATCTCTGCAA GAATTGGGGG CACTGATGAT 
    GATGAATCAA ACAAAACTGA AGTGGAGTCT GCCTTGAGGA CTGCAATTCG 
    CAAGCATCCG ACGCCGAGCA CTCTTATGGT TGATATACAA TGGGTGGATT 
    GGATCTTTGG TGCTGAAGGG AGAGACTTGG ATGAAGATTT GGCACAACAA 
    GATGATCACG GGTATGGATT TTTCATTCTA TTCCCAGGTT ACAACTTACA 
    AGGATTATTG AGCTTCTTTC TTTCTCTGCC GTGGCTTCTA TCTTTACCTT 
    CTATGCATCT TCAACCTGAC TTGATGATTG TTTGAAACCA ATTTTAATGG 
    AAGTTAAATG TTATTGTTGT GACCCTGAAT CAGGTTTTGT ATGCTACCGG 
    AATCCTCTTC ACGTCTTCAG AGTAGAGGTA ATTTTGTTTC TTGTCATTTT 
    ACAGTTACAG TTCATCTACT TAAGGAATTA ATGGGAGGTC CTATATTTTC 
    TCGGGTACCT AGAAGGTGTG GTTCCTAGTC TTACCTCCTT AAGAACCGTA 
    GAATGTTGGC CCTAACACTT GGATCAAAGA ACGAAAGGTG TATGCACTAT 
    AGTATCCTTT ATATATTGCA CAAGTCAAGA CATTTGTTAA AACACACCCA 
    GTGCTAGTAA TTTGTTTACT GAGATATGAA TTATCGCCAA ATACCCATAC 
    TGAGCCTATT AGTAAAATAT TTACGAGGTG TTTGAGGACA GCATAACTTT 
    CAGTAAAGAA TTTACTACGT GAGGTGTGTG TTTTAGGTAT TGCGCATCTT 
    GGGTGCATTT TAGCGCAAAC GTGTATAATA TATATCCCAT GGTACTAACT 
    CATGTCTTAA CCATAATTGC ACACCAACAC AAAACATACA CTACTACAGA 
    GATAAGTATC GAAGAAGACA TGCCCACCGG TGCGGAAGGG ACGGTGATTG 
    TGCCCCACAC AATGGAGCAG TTCGCCCTCC ACATGAGCCA AGCCAAGCAA 
    TCCCACAAGC TCGTAGTCAT CCAGTTCACT ACTTCCCGGT GCCCTGCTTC 
    ACGCTACATC GCGCCAGCTT TCACCGAGTA TGCGAAGGAG TTCGCTGGTG 
    CGGTTTTCAT TAAGGTCAAT GTCGACAGCG ATGAGCTGGA GAGTGTTACG 
    GACTGGTATG ACATCGAAGG GATAGTGCCA ACATTTTTCT TCGTCAAGGA 
    TGGGGAGAAG ATTGACAAGA TTCCTGGTGC TAACAAGGAG TTGCTCCGAG 
    CCAAAATTCG AAGGCACACA GCTTCTCCTT ACTTCCTCCG TTGATAATGA 
    CTTCTTTTAT CGTCTTTGTC TAGTATATAT ATGGCACTTA TATAGTTAAC 
    TAGGAAGGGC ACCTTGTTTA ATGTAGCTTT CATTTTTATT ATGAATGTTA 
    AGGATGATAT TATATTGTTG AAGTATTTTT TTACTCCC

    Gene models with high sequence identity

    1. AT3G46730.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 3e-44; Score: 178.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Thioredoxin-like 10.45
    HMMPanther THIOREDOXIN H-TYPE-RELATED 1.6e-29
    HMMPanther Thioredoxin, core 1.6e-29
    superfamily Thioredoxin-like fold 9.8e-23
    superfamily L domain-like 1.7e-10
    superfamily P-loop containing nucleoside triphosphate hyd 2.2e-10
    FPrintScan Disease resistance protein 9.9e-11
    FPrintScan Disease resistance protein 9.9e-11
    FPrintScan Disease resistance protein 9.9e-11
    HMMPfam Thioredoxin domain 3e-16
    HMMPfam NB-ARC 1.9e-51
    Gene3D Thioredoxin fold 2.4e-18

    See the detailed result >

    AT3G46730.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Computational Description
    NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT3G46530.1); Has 14658 Blast hits to 14197 proteins in 483 species: Archae - 6; Bacteria - 489; Metazoa - 440; Fungi - 102; Plants - 13534; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR