K21236

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21236

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21236

Determination of introduced cDNA(s)

  • J023139H09 - Rice Full-length cDNAs - Original: J023139H09

    full reading [+] show sequence

    Nucleotide sequence: J023139H09 - full reading
    GGTTGATGGT AGTAGACGGC TTCAGAATTT GAGTGCAGGA CTGTTAACAT 
    TAGGGAGCTT CTGTACACGA CGAAGCATGT ATCTCCCCAT CTGAGACAGA
    CAATTCTTCG AGTGCGAAGC ATCCGTGGCA CTTCTATGTG CACGATTCCT
    CGAGTGCTAC AAACGGTTTC GCTACCAACA ACGGCTCGTG TTCTTCTGAA
    GGAATCTGAC GTGACGTGCA GCGGCAGGGC ACTTGACTGA CCGATGAGTT
    CGTTGCTTTC CCGGCCCGTT TGCCACTCCT GAACAATCGT AGCGAGGGGA
    GGGGAAAAAG ACGACCCCGA ATCGCCTTAA GACAGTGGGT GTTCTTGTCG
    TGCGCTTCAC CGTTTGTCTT GTTGGACCCG GAGACCCCAC ATATCCAGAT
    CTGCAAGCTT CCTCCTCCTC CTTCCTCCTG ATCCTTTAGC TTCCTATATA
    CGATTCCACC ATCGAAGGCC AGGGCCCAGA CTTGCTTGCC GCAGGTTACT
    GATCCACCGA AGGAGGGAGG CGCCCGCCCG CCGCCATGGC CGAGGTGACG
    GTGGTCCGTG CGGAGCGCGA GGAGGAGTCC ACCCTGGAGC AGGGTCTCCT
    CGCCATCCCG GAGGAATCCA ACCAACTTAC ATACACTGGA GATGGATCTG
    TCGACTTTTC TGGGAATCCT GTTGTGAAGG AGAGAACTGG TAGATGGAGG
    GCATGCCCAT TTATCTTAGG TAATGAGTGC TGTGAGCGGT TGGCCTATTA
    TGGAATCTCC ACAAACCTTG TTACATACTT GACAAAGAAA CTGCATGATG
    GTAATGCTTC TGCTGCTAGC AATGTGACTG CATGGCAGGG AACTTGCTAC
    TTAACTCCCC TTATTGGAGC TGTACTGGCT GATGCATACT GGGGAAGGTA
    TTGGACTATT GCAACATTCT CCACGATATA CTTCATTGGG ATGGCTGTAC
    TGACTCTTTC AGCATCAGTT CCTACATTCA TGCCTCCACC TTGCGAAGGG
    TCCTTTTGCC CACCAGCAAA TCCATTGCAG TATACTGTCT TTTTTCTTGG
    ACTTTACCTA ATTGCTCTTG GTACTGGTGG TATTAAGCCC TGTGTCTCAT
    CCTTTGGAGC AGATCAATTT GATGATACAG ACCCAGTTGA GCGAATCCAG
    AAGGGATCTT TCTTTAACTG GTTCTATTTC TCAATAAACA TTGGTGCTCT
    CATATCAAGC AGTTTTCTGG TTTGGGTGCA AGACAATATA GGATGGGGAA
    TAGGCTTTGG CATTCCAACA ATTTTCATGG GGCTGGCCAT CATAAGTTTC
    TTCTCTGGAA CATCACTTTA TAGATTCCAA AAGCCAGGCG GCAGTCCTAT
    TACACGAGTA TGCCAGGTGG TTGTTGCCTC CTTTCGCAAG TGGAACGTAC
    ATGTTCCAGA GGATAGCTCT CGCTTGTATG AGTTGCCTGA TGGGGCTTCA
    GCAATTGAAG GGAGTCGGCA ATTGGAGCAC ACCGATGAAC TCAGATGTCT
    GGACAAAGCT GCTACAATTA CTGATCTTGA TGTGAAAGCA GATAGCTTTA
    CAAACCCATG GCGAATATGC ACTGTGACTC AGGTGGAAGA ACTGAAGATA
    TTGGTAAGGA TGTTCCCTGT CTGGGCAACG ACTATTGTGT TTTCTGCTGT
    CTATGCTCAG ATGTCCACCA TGTTTGTTGA GCAAGGGATG ATGCTTGATA
    CATCAGTAGG TCCATTCAAG ATTCCTCCAG CATCTCTATC TACCTTTGAT
    GTGGTAAGTG TCATTATATG GGTCCCCCTC TATGATAGTA TCTTGGTTCC
    AATAGCTAGG AGGTTCACTG GCAACCCGAG GGGCTTTACA GAGTTACAGA
    GGATGGGGAT TGGTTGGGTA ATCTCAATCT TTTCGATGGC GGCAGCTGCA
    GTTCTTGAGA TTAAAAGGTT GGACATTGCA AGGGCTGAAC ATTTGGTGGA
    TCAAAATGTT CCAGTACCAC TGAACATCTG CTGGCAAATT CCTCAATATT
    TCTTGGTTGG TGCCTCAGAG GTCTTCACAT TTGTCGGGTC ACTTGAGTTC
    TTCTATGATC AATCACCGGA TGCCATGAGG AGCCTCTGCA GCGCACTGCA
    GCTTGTCACA ACAGCTCTTG GGAATTATCT CAGTGCATTC ATTTTGACAT
    TGGTTGCGTA CTTCACAACA AGAGGAGGAA ATCCTGGATG GATTCCTGAT
    AACTTGAATC AAGGTCACCT AGATTATTTC TTCTGGCTTC TTGCTGGGCT
    CAGTTTTCTG AACTTTGTGA TATATGTCAT CTGCGCAAAC AAATACAAAA
    GCAAGAAAGC AGCTTGAGCT AATCAGGAGT TAAAAGACTG TCGTCATGGG
    AATTTCACTT CAAAATTCTG TATATATGTG CACAAAGTAC ATGTTGAAGC
    AGCGACCGTA ACAAGAGAAC TTTAACCATC CTGTACTCTG TATTTGATGC
    TACTATACAT TTTATACTTT TTGTTCTGTA GATATTAATT TATTGAAGCT
    ACTTGTGGAA TGTAGCTTTG CTTCC

    Gene models with high sequence identity

    1. AT2G02040.1 [+] show detail - peptide transporter 2
      E-value: 0; Score: 838.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oligopeptide transporter 1e-110
    superfamily Major facilitator superfamily, general substrate transporter 1.3e-27
    PatternScan PTR2 family proton/oligopeptide symporter, conserved site 0
    PatternScan PTR2 family proton/oligopeptide symporter, conserved site 0
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 0
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 0

    See the detailed result >

    AT2G02040.1

    Model type
    Protein coding
    Short Description
    peptide transporter 2
    Curator Summary
    Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.
    Computational Description
    peptide transporter 2 (PTR2); FUNCTIONS IN: dipeptide transporter activity, high affinity oligopeptide transporter activity, tripeptide transporter activity, peptide transporter activity, transporter activity; INVOLVED IN: dipeptide transport, tripeptide transport, peptide transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G62200.1); Has 8080 Blast hits to 7668 proteins in 1494 species: Archae - 0; Bacteria - 3960; Metazoa - 799; Fungi - 488; Plants - 2224; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR