K21301

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21301

Determination of introduced cDNA(s)

J013123L24 - Rice Full-length cDNAs - Original: J013123L24

full reading [+] show sequence

GGTGTGGCGT CGCTTCCCCT ATCCCCGCTC TCTACTTTAT CCAGGGCCTT 
TCCCCTGCTT ACCTCCACCC CACCATCCCC CGCCGCCGCC GCCGCCGCCC 
CAGATTCCTC TCGGCGGAGA CCTCAGCCTC AGCCCTCAGG GGCGCGGCCG 
GTTTAGGGTT TCCCCCCGCC GCAGAACTGG GTGCCGAGGC TCCCGCGCCG 
CCGCCGCTGC CGCCGCCACC GACGACGAGG GAGGAGGAGA GGCTTAGCCC 
TCTCCCGCAG CGACCGCGAG GTGTTTAAGG TATATGAGGG AGGAACAAGG 
CTGCAGAGGG CTTGCAGTGG TTGCTTAACT TGGGGAACTT GCGATCACCT 
CAGTTAACTC TCTGTGGGTG GCCGGGTGCC TGGAGGCCGT GTGGTGTCAC 
CCAGACAACA TTGCATGATA ATCGTCTTCC TTGTAGGATG TCTTGTTGCT 
TGGGTGTGTC AAACTTGCTG TAACAAGCTT TGGGTGGTCG GGAAGCTTTT 
TTTTTCTTAC TTTCTTACAT CATCTTTCTG TCTTTAACTG GTATACCTAG 
GTCCACAGTT AAGTTGACTG AAAAATCTAT ATATATTTTT TCCTGTTACC 
AATTGTCTTT GAGCTACCAA CCAAACCAAA TTATTGTACA TTTCAGGTGC 
AGCCTGTTTT TCATTGACAT GGGACATACA TTAGTGTAGA GGCAATATTA 
GAGTCATATA TTGGTAAAAA GATTTACAAC CTCCATTTTA TGATCAGATG 
ACCTGCAGAA TGGCAGCAGG CAAGCAAAAG AAACGTATAA TAAGGTCTAC 
TAACTCAGAT CAAAACAGGA CATGGAAGAA GTCAAAAGTT GAGTCTTCTA 
ATTGCCATAT AAGTTTGAAG TCTCAAATTG CTCTTAAATG GGATGACTAT 
CAAAAGAGAG TGGTTCCCCA AAAGGAACAA GTTGGGATTT TGTGGTCAGA 
CTTGGCACCA TTCATAGATT CCAGACAGAA GCATGATTCA GGGCTGGCTG 
ATGTTACATA TATTCCTCCA GAGACATTTT CCTTGGAGAA CTTGAGAAGT 
GTGCTGTCCT ATAAGGTTTG GGATACATGT CTGACAGAAG CTGACAGAAA 
GTTTCTCATA CAGTTTCTTC CAACTGAGAT TGATGCAGAA GAAAATGTTC 
ATTTATTGCT TAAAGGCCAA AATTATCACT TTGGAAATCC TTCCCTCAGC 
TGGTCCTCCT CTCTTTGCTA TGGTGATACT CACCCAGATG CCTTACTTAA 
TAAGGAGAAG CAAATTAGAG CTGACGAGAA GGCATATCGT GTTAACCTGA 
ATAACTACCA TTCCAACATG GTTGAGTCCT TGAAGAAATG GAAGAAGAGA 
TGGCTAAGTT CTGATGATCC AGAAATAATG TTCAGGGATA ATAACCTTGC 
TAAACACAAG CAAGGAGATA CGCGACCAAA AGTTACCAGT AGTGAAATGC 
CCTTGAAGGT TGCACAGAGT AGTGATGTTT CGAAGTTTAT GTCATATATT 
GAGATCAGCA GAACACAGCA CAACCTTGTT AAGAGCATGA AGCAGTCTGG 
TGATGGCATT AAAACCAAGC ATCTTACTCG TGTAATTGGT AACCTTGATA 
AATTCCATGT AAAACCATAT GGAACATTAA TAGATGATGA ACAGAGGAGA 
CTGCGTGAAC ATTGGTTGAA CATATCCTGC AATGATATAC CTGCTGCTTT 
CGAGGTCCTT AAGAACAATA GGGTGACAAC AGAGAAACTG AGAAATTTAC 
TTGGTCTTGA GCTAGGCGAA AAGAATGTAT CTATCATGAG AAAGGTTCGC 
TGTGACTAAT CCTTTCAATT CTTGTTTGAA AGTCTTTTGA TTTTCCAGAT 
CAAGGTATTT TACTTGAATG TATGAAAAAT ATAGTGGATG ATATCACTTT 
GTTCCTACTA CTATGTGTCT TGTATTTTTC ATGTATCATA TCATACACAG 
CAGCAAAGTT ACTATTCGAC ATGATGTTCA TTCTAAAACT CTGTTACCAT 
GTGTATAAAA TACTGATTTG T

Gene models with high sequence identity

AT5G13950.2 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
E-value: 1e-48; Score: 191.00

InterPro Scan Digest

See the detailed result >

AT5G13950.2

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 147 Blast hits to 145 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 56; Fungi - 6; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR