K21306

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21306

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21306

Determination of introduced cDNA(s)

  • J033046G09 - Rice Full-length cDNAs - Original: J033046G09

    full reading [+] show sequence

    Nucleotide sequence: J033046G09 - full reading
    GGTGCTGGTG GCCTAGAATC TCTCTGACTC TCCTCTCTCT CTTCGCCTCC 
    TTGTCGGCGG CCAGCCGCCG CCGCCGACCT CGCCGGTCGC CGCCACCGGC
    GCCGCCGGCG GAGACGCCGA GAAATGGGAC GGAGCCTCTC CGTGGCAAGG
    TGCCCCCGCG AGCGTCGCCA AAGCGAGACG AATTGTTTGA TCCTCGTTTC
    GCTTGGAATG GACTAGGGTT CCGGTAGAAA TTGGCGCGCG CTTGAGGAGA
    CAAAGAGTTA CGACGAAATT AGATTATTTT GGGGGGTGAT ATGTTCCAAA
    TACCGAAGAC TGATTCTGAT TGCCGCTGCT GTTTGTTGGA GGACCAGAAG
    ACATCTCACA AATATTTTTG GGGTTGGCAT ATAATACATT ATTATGCAGT
    CTCGTGAGGT CTTAATCTCC ATTTCACAAG AAGAATCCTG TAAATGATGC
    ACAGCTGTTA TCTCGTCTCA TAAGTGTGTC TTGGTTCAGT AAAAAACCAA
    GTGTGGCTGG GGAGATTTCA GTTGTTTGAG GATGACCTTA CTCATGATAT
    ATTCCAGGTA CAAGGTTGAC AAATTCTTAC TGGGAACAAC ACAATTAGAC
    AGCAGTTTAT ACCGGCAAGC TTGTTCTAAA TAATCTTTGT ACCGGCGAGA
    AATTTACTTA TCAGATTAGA CTCCAGGCAA CTACTGAAGG GAAGCCCCAG
    GATTACATCA GAGCTACTTT CGTGTCAAGA ATGAGGTGCA CGGTGCTCTA
    TTGTATCTTA CAGTTGGCCT GCCTCTTCTG AAGCTTGGTT CAGATCAGCA
    TATCTAAATG CAATAACTCC ACTACCACTA TGAAAATTCT TTCTTCTGTG
    ACCAAGCAGC CAACTCTTGT TCCTTGGGAT CTTCGCTATC AAGAAGAGTG
    CCAAAGCAAA GGAAGCAACA CTTGCAGTGA TGGCAACGCC AATGAATATT
    GATCGTCCAC TGCTTTTTAT ACTTTGCACC TCTTTGGCAG CAAGGCGAAG
    CCGCCTGCTC GATCATCTAG CTCCCAGTCA TTGGGTGATC GTACAGAGAA
    GCCCTTCATA CACTTGCAGA TAGGAAGCTT GCTCTCTTCG CAGACTGTGA
    AAGCTCCACA AATGCCATAC ACATCACACT GCTTTGGGTT GGTGTAGGTT
    GGTACCCAAT CTTGCACATG CTCCACCCAC AAAAATATCT TGGTCTGACC
    AGAGATGTCC AGCATAAAAC GCATGATCGT TGCGTTATCT AGTAAGGTAT
    ATGTGAAGTA CACTTCTTCA TCATTGTTGA CAAAAGTAAA ATCAATTAAG
    CGTTGACCTG TCATCTCTGG TATGGAACCA AAGTAATGTC CGTTCCATTC
    TCCACTAGAC CAATATGGTA TAGAGGAGTT GAGAGCTGCA AGGATGAACC
    TGGTAGAACC ATTGTTGTCA GTTAACTCGT AACTGTACAT GCCAGAAGCT
    GGGTCTACAG AGTTTTTCCT GGAAACAAGA CGGCGGTTTA AGCCAGTGAC
    CTTGTTCCGG CCTAGCTTCG CACCGGCGAG ATGGGTATTT GTTGGGTAGT
    CAAAGCTTTG CCACAAGACA ACCGAAGAAT TTGAGGTGTT CTGCAGGACA
    AGGTTGCCAT TATCCAATAG CTTGACCATT GTTGTGTTTG CTGTGATGTC
    AGCTTGGGTT GACCAGAAGA TGGACTTTGT GGCCTGATCT AAGATGACAA
    GGTTTCCGTC ACCGGAGATT GTGGCCTCCG GCGAAGTGGG GCCAGTGACA
    GGCTCATCTC CATTGGCAAC CCATGCTGGA GTGAGCTTTG GCACCTGGTT
    GAACCATATC CCCAGGTACC AGTTTGAAGC ATTGTGGGAG GACTTACTGC
    TGGTTGGGAA GAAGCCAAGC GCAAACTTGC CGTTGCTGGA GACAAGTATG
    TCATTGCCGG CGAGTGTCTC CCCAGCTGAG ATGGTGTCTG TCACCTTGCA
    GGATGCAGGA ATGTGCAGTG TGAAGAGGAG GAACAGGACA GTGATGGGAA
    GAGCCATGGT GAACAAATCA AGAACTAGCT AGCACAGCTG CAAAGGTACT
    TGGGTGAGGT AGATGACAGA GGATGCCTTG GCTGTGTACA TCCAGTTTGG
    ATGTAGAGGC CGGGTTTAAT CAATTTTATC TAAAAAAAAA GGATGACAGA
    GGATGCCAAC TGCGGCTTGC GCGTGTGGAT ACGAGAGAAC ACACTGCAAG
    AGGGAAAGTG AGTAAGCTTG CATGGTCGTT GGGACTTGGC AGATGGTAAC
    ATATTTGAAG GCAGAAAGAA GGATGGAGTC ATTGGCCTGA CCTAGCATAT
    ATGGCAGTAA AAAAATTACA TCATGATACA GACATATAAC CGACTCTTAG
    GGCTTTGTGA CCAATTAGTC GGCTGGCGAA TTAAAGAATC CGAAAGTACG
    GCTGATTTCT GTCAAATGGT CAATCGACCG GGTTGTAATT TGGACTCAGT
    TGTTGGTAAA TGATACTTCC TCCGTTTCAT ATTATAAGAC TTTCTAGCAT
    TGTCCACATT CATATAGATG TTAATGAATC TAGATATATA TGTATGTGTA
    TAGATTCATT CATAAATGAA ACGGAGGGAG TACTTCAATA GTGGCATAAA
    TGACTTTCTG AAAACCAGAA ATTTGTAGCG CT

    Gene models with high sequence identity

    1. AT2G19130.1 [+] show detail - S-locus lectin protein kinase family protein
      E-value: 3e-60; Score: 230.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Curculin-like (mannose-binding) lectin 18.336
    HMMPfam S-locus glycoprotein 1.9e-31
    HMMPfam Curculin-like (mannose-binding) lectin 6.8e-30
    superfamily Curculin-like (mannose-binding) lectin 8.5e-32
    HMMPanther gb def: OSJNBa0089E12.21 protein 0.0000000044
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 0.0000000044
    HMMSmart Curculin-like (mannose-binding) lectin 7e-28

    See the detailed result >

    AT2G19130.1

    Model type
    Protein coding
    Short Description
    S-locus lectin protein kinase family protein
    Computational Description
    S-locus lectin protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Apple-like (InterPro:IPR003609), PAN-1 domain (InterPro:IPR003014), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase 4 (TAIR:AT4G00340.1); Has 116366 Blast hits to 114909 proteins in 4332 species: Archae - 99; Bacteria - 12770; Metazoa - 42761; Fungi - 9470; Plants - 34242; Viruses - 402; Other Eukaryotes - 16622 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR