K21321

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21321

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21321

Determination of introduced cDNA(s)

  • J023108N22 - Rice Full-length cDNAs - Original: J023108N22

    full reading [+] show sequence

    Nucleotide sequence: J023108N22 - full reading
    GCCCGCCGCC CGAGCTTATC TCCATCCTAC GAGCAGCGGC GCCGGCTCCG 
    GCGTCGGCGT CCCCCTGCTC CTTCCGCCGC CTCCTCGCTC TCGCCGGCCC
    GTCCCTGGGG AATGCCCAGC TGAATTCAAT GGCTCAAGTT ACTGCGACCG
    CGAATGCTCG GGTGCTCGGT TTTCCTGCCG CCAGCCGCCA TGGTGGCCCT
    GTAGGATCGC GTGCTGGGCC GGCGTTTCTG AATCTGCGTG CTCCCGCACT
    TCGTCATGAC AGTAAAAAGC ATCCTTTGAG AGTTGGTGCT GCCTCTTCAT
    TATTCACAAA GTATGATCCT ATCAAAGGCA TCAAACCATT GCTGTCAATT
    GACAAGTTAC GTCCTAGAAC TCAAGTTGGC TGTCGAGCAT CTTTATCATC
    ATTCAGCTTC CCTGAGTTGG AGACCAAACC TAGATGGTGG TGGAGGACCT
    TAGCGTGTGT CCCCTATCTT CTGCCGCTGC ACAACATGTG GTCCTTTGCA
    GATGCTGTGT ACCAGCTTCA TCCATACTTG CAGCAGTTTG GGTTGTTCTA
    TGCATTCATC GACACAATGG CGTTAGTCCC AGGATGGCTC TTTCTGATGA
    TCTTCATGAC CGTCTACTTC TTTGTGGTCA GGCGGAAGTG GTTGCCACAC
    TTCTTGCGGT ATCACGTCAT ATTGGCTATT CTCCTTGATA CTGGTTCTCA
    AGCTCTGGCG ACCATGTGCA ACTGGAATCC AAGCATTGTT TATCAGGGTA
    AACCAATGGT GTTTTTCTGG ATGACGATTG CCTTCATTCA GATATCCACA
    GTTCTTGAGT GCATGAGGTG TGCTCTGGCA GGCATGTATC CCAGCGTTCC
    GTTTGTATCT CAAACGGCTT TCATCCACTC TGATATGAGT ATGTTCAGGT
    AGTTGGTTAG TGCAATATGC ATCTTTGAAT ATAAGAAGCA TTAAGGGATT
    TTTATACGAG AGATTTGAAA CTGCTGAGAC AGTAAAATGT TGGGAATTAT
    GAGGTACAAG AGGTGGGGAT GCAAGGGGAT GAAATCAGAG GCAATGCTTA
    TTTGCAGTGT TGGCACTTCT

    Gene models with high sequence identity

    1. AT1G04940.1 [+] show detail - translocon at the inner envelope membrane of chloroplasts 20
      E-value: 1e-45; Score: 181.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G04940.1

    Model type
    Protein coding
    Short Description
    translocon at the inner envelope membrane of chloroplasts 20
    Curator Summary
    Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation.
    Computational Description
    translocon at the inner envelope membrane of chloroplasts 20 (TIC20); CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109), Chloroplast protein import component Tic20 (InterPro:IPR005691); BEST Arabidopsis thaliana protein match is: HIT-type Zinc finger family protein (TAIR:AT1G04945.3); Has 279 Blast hits to 278 proteins in 76 species: Archae - 0; Bacteria - 100; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR