K21332

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low saturation (PATO:0000328) (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21332

Determination of introduced cDNA(s)

J013064O20 - Rice Full-length cDNAs - Original: J013064O20

full reading [+] show sequence

GACGAGATCA AGAAGAAGAG GAAGAAGTCG CTTCGCGGGC GATGGCGAGC 
AGCTCGTCGC CGCCGCCGCC GCCGCAGATT CGTTGCGCCT CCTTCAATCA 
GGACAACAGC TTGTTTTATG TCGGGACGAA GGATGGATTC AGGATTTTCG 
ATGCCCATAC AGGGAAGCTC CACTACCAGA AGAATATTGG TGGAATCGGC 
AATATGGAAA TGTACTTTCG GACAAACATT CTTGCTATAG TCGGAACTGG 
TGAACAGCCT GTACTATCTC CTCGCTGCCT TCGCCTTATC GACACCGTAG 
CAGCTGTCAC AAAGAAAGAT CTGAACTTTA TGACTTCAGT TTTGGCTGTT 
CGATTAAGTA GAACGAGGCT TGTTGTTGTA TTGCAGGACA GGACCTTTAT 
TTATGATGTA AACAGCACTA CTATATTGGA AGAAATTGAA ACAGTTCCCA 
ATACAAAAGG TCTTTGTGCA TTCGCTCCTA ATTCAGAAGC ATGTTATTTG 
GCCATCCCAG CAAGCACATC CAAAGGATCT GCTTTAGTTT ATAAGGCATC 
AGAACCTGAA TTAATATGCC AGATAGATGC TCACGAGTCT CCCTTAGCTG 
CAATGGCATT TTCTTCTAAT GGCACGTACC TGGCAACAGC TTCTGGGAAG 
GGTACTATTA TTAGAGTATT TCTCGTTGCA CAAGCAACCA AGTCACACAG 
TTTTCGGCGG GGAACATACC CATCAACAAT ATATTCACTC TCATTCGGAC 
CATCGGATGA TCTGCCCGAT GTTCTTGTTG CCACAAGTTC ATCAGGCTCG 
TTGCACATGT TTTTCCTCGA TGCTGCCAGA AATCGAAGGA ACCAAACGAG 
CAAATTGCTT GGTTCAATGA TTCCTGGAGC AATAACTCGT GCTTTGGATC 
CAGCAAACCA TCACATTATT CACAACGTCA TCCCTGCAGG AATCAAGAGC 
TGTGTAGCCG TACATAAGGT CGAAAATTCA CAAAATTCTT CTAAACTTCC 
TGCTTTAAGG ACTGTTGTCT ATATCATAAC TCATGATGGA TACTTCCGCG 
AGTACTCGAT CAACACCACA AAGTCAAATG AATCTTCCTG GGTTTTGCAA 
CGCGAGCTCA ATCTACTGGA TACCGGTTGT AGCACTCCCC AGCGGGAGGA 
ACAACACAAG GACTGACTAG CAGACTAGTT GGCTCACCAA TGACAGAAGC 
TTCAGCTGTG TGTACATACA ATTTGTAAGA TAGTGTGCTG GTAGGGCTGG 
TCTGTGGTTT GGGCTGAGAT TCTAACTCCA ATTGGACAAG TGTATCATAG 
ATGTGCCCAC CAATGGTGAG GGATGATTCA TCCTTCTTGT GGATGTAAAT 
TATAGATAGT AACTGCCAAT ATGGCAATAT AATTACACTA CAAGTATATG 
TAACTGCTTT GCTACACGAC TGACAGACTT TGCCCTGAGT GGTTACAATG 
AAATGAACCA GCATACTGCC ATACTGAC

Gene models with high sequence identity

AT4G30510.1 [+] show detail - homolog of yeast autophagy 18 (ATG18) B
E-value: 1e-85; Score: 313.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	WD40/YVTN repeat-like-containing domain	2.2e-09
HMMSmart	WD40 repeat	12
HMMSmart	WD40 repeat	0.0032
HMMSmart	WD40 repeat	50
superfamily	WD40 repeat-like-containing domain	6.7e-23
HMMPanther	WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINO	1.8e-86
HMMPfam	WD40 repeat, subgroup	0.0018

See the detailed result >

AT4G30510.1

Model type: Protein coding
Short Description: homolog of yeast autophagy 18 (ATG18) B
Computational Description: homolog of yeast autophagy 18 (ATG18) B (G18B); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G62770.1); Has 1228 Blast hits to 1183 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 531; Fungi - 398; Plants - 152; Viruses - 2; Other Eukaryotes - 143 (source: NCBI BLink).
Link: InterPro Scan - TAIR