K21344

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21344

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21344

Determination of introduced cDNA(s)

  • J023109D15 - Rice Full-length cDNAs - Original: J023109D15

    full reading [+] show sequence

    Nucleotide sequence: J023109D15 - full reading
    GGGGGGCCGT TGAAGAGAGG AAAACCTAGG CTAGTTGGCG AGCTCGCCCC 
    ACTCCGTCGG CGGCCGCGCC TTCCCTGTGC TGGAATCCAG CGGCCGCCGG
    AGACGGCGAG TTCGACGCCG CGGCTGCGCG CGGAGACGTT AACCCTGCGG
    CGGCTCCTAC CTAGGAGGTG TTCTTACTGG TTGTTATAGC GATTCTCTGT
    TTGGTGCCCA TGAGCAAGAA GAAGAACAAG TCTCAATTGC CAATAAAGGC
    GCCGTTGAAA GATGCTGAAC AAGGAATAAC TTCGGATTAC ATTGGAGGAG
    ACGCTCTTGA TGACCTATTA TCGAAGCTTA TTAAGAGCGT GGAGGTTGCA
    AAGGCTTCAA GGGAAGGGTT GCCGGAAAAG ATATGGATGA AGCGACAATT
    TGCCGTTGGG GTCAATGATG TCACAAGGGT TCTTGAGCGA ATGCCTGCTG
    CTACTGCTGC CACCCATTCT GGTCACTCTT CTACTGAAGC AATAACTGAC
    AAAGCTCTGT GTAGAGCTCC TCCGGTGCTT CTTCAGGTTG TCCTTGTAGC
    TGCTGATTGC AACCCTAAAT GGTTAACAAA ACACATACCA ACCCTGGCAT
    CTACAAGGCA GGTTCCTGTG TTGTGCCTCA AGGACAACAA AGAAAGCTCA
    CTGAGGTTAG GTCAAGTGGT GAATGTCAGA ACAGCACTGG CCATTGGAGT
    AAAGGCCAGA GATAGCATAA TCAATAAGGC TATTGATGAA GTCCTGAAGA
    CTGCTAATCT GGTTGCCAAG GAACCGTAAC TGAGCTTCTG GTCCAATCTC
    AGTGACATAA TGGGCGAATT TATTTTTAAA CAAGGCAGAA GCTCTGCCTC
    ATTCCACTAA TAAAGAATAG ATATTGACCC AAGAAAATGT TTGCACCAAA
    AACTGATAGG TGAATTTTGG ACCTCTGGGT GCTCAGCATT GCAGTAGCAT
    CTTGACAGGA AGTCATGAGG ATGAATGGGC ATGCAGTTGA GAATTTCGCG
    AAGGAAATCA AGGATGCTGC TGAACTGTGG CGTTTACATC TGAAGAACTT
    TTTCTGCCTG TATTCATGAA GATCAGGCCA GACCAGGCTT GTTTGTTAGG
    TAGGTTCATT CTGTTTAGTT GAATTTGTGG ATCATAGAGC TAGCAAAGTT
    GCTCGCCTAG ACTGTAGGCT ATATTATGAG CAATTTAGTG CGTATGTGTC
    CACTATGTAT AATGCCATTT GCAGCCTTGT GGATATCTGC CTTATGTTGT
    TTGTGTTCAA CCTTAATTTG GACGATATAA ATCATTATCA TAACAAACAT
    CCTTAATACA TAAACCAGGA TAGATGTACT AACGTTATT

    Gene models with high sequence identity

    1. AT4G01790.1 [+] show detail - Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
      E-value: 3e-27; Score: 120.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 1.6e-05
    superfamily L30e-like 3.9e-10
    Gene3D no description 0.00055

    See the detailed result >

    AT4G01790.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
    Computational Description
    Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); Has 95 Blast hits to 95 proteins in 35 species: Archae - 3; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR