K21349

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21349

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Original: K21349

Determination of introduced cDNA(s)

  • J033069M07 - Rice Full-length cDNAs - Original: J033069M07

    full reading [+] show sequence

    Nucleotide sequence: J033069M07 - full reading 
    GACGAACCGA CTTGGTCGCC ACGGAAGCGC AGCATCAACA AAGGCAGCAG 
    CAGCAGCAGC AGCAGCAGCA GCGTTGGTGG TGGTGGTGTG TCATCACCAA 
    CATTTTCACG AGAGGAGAAG GATGGAAATG GCGGCGGCGG TTGGGGGCAG 
    CGGGAGGAGG GACGCGGAGG CGGAGCTGAA CCTGCCGCCG GGCTTCCGTT 
    TCCACCCGAC CGACGAGGAG CTCGTGGTGC ACTACCTCTG CCGCAAGGTT 
    GCCCGGCAGC CGCTCCCCGT CCCAATCATC GCCGAGGTCG ACCTCTACAA 
    GCTCGACCCC TGGGATCTCC CTGAGAAGGC GTTGTTCGGG AGGAAAGAGT 
    GGTACTTCTT CACGCCGAGG GACCGGAAGT ACCCGAACGG GTCGAGGCCG 
    AACCGCGCAG CGGGGAGAGG GTACTGGAAG GCGACGGGAG CCGACAAGCC 
    GGTGGCGCCC AAGGGGAGCG CGAGGACGGT GGGGATCAAG AAGGCGCTCG 
    TGTTCTACTC CGGGAAGGCG CCGAGGGGGG TCAAGACGGA CTGGATCATG 
    CACGAGTACC GCCTCGCCGA CGCCGACCGC GCCCCGGGCG GCAAGAAGGG 
    CTCACAGAAG CTGGACGGGT GGGTGCTGTG CCGGCTGTAC AACAAGAAGA 
    ACAACTGGGA GAAGGTGAAG CTGGAGCAGC AGGACGTGGC CTCCGTGGCG 
    GCGGCGGCGC CGCGCAACCA CCACCATCAG AACGGCGAGG TCATGGACGC 
    GGCGGCGGCT GACACCATGT CCGACAGCTT CCAGACGCAC GACTCCGACA 
    TCGACAACGC CTCCGCCGGC CTGCGGCACG GTGGCTGCGG CGGCGGCGGC 
    TTCGGCGACG TGGCGCCGCC GAGGAATGGG TTCGTGACGG TGAAGGAGGA 
    CAACGACTGG TTCACCGGCC TCAACTTCGA CGAGCTGCAG CCGCCGTACA 
    TGATGAACCT GCAGCACATG CAGATGCAGA TGGTGAATCC GGCGGCGCCA 
    GGGCACGACG GCGGCTACTT GCAGTCCATC AGCTCGCGGC AGATGAAGAT 
    GTGGCAGACA ATCCTGCCAC CATTCTGAGA TGGATGGAGC AAGAAAAAGG 
    TTGCTGTAGA TAAAGGGCGG AAATAGGAGT GATGGCTAGA AAATTATTAG 
    ATTTACTAGA ACGAAAATGA TTAGAAATCT GGCAAGCATG ATTCTGCAAA 
    TGTGGTGGTA GATGCTTGCA GTATGTAATT CATTTGTTCA GTATATGCAT 
    TTGGTAATCT GCAAAACATC TCCTTTTGTT CTC

    Gene models with high sequence identity

    1. AT1G01720.1 [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
      E-value: 9e-70; Score: 261.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam No apical meristem (NAM) protein 8.9e-52
    superfamily No apical meristem (NAM) protein 5.3e-67
    ProfileScan No apical meristem (NAM) protein 61.439

    See the detailed result >

    AT1G01720.1

    Model type
    Protein coding
    Short Description
    NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
    Curator Summary
    Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA.
    Computational Description
    ATAF1; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 32 (TAIR:AT1G77450.1); Has 3043 Blast hits to 3037 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3043; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR