K21351

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21351

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21351

Determination of introduced cDNA(s)

  • J023004E23 - Rice Full-length cDNAs - Original: J023004E23

    full reading [+] show sequence

    Nucleotide sequence: J023004E23 - full reading
    GACATGCCTC GAAGTTTAGC CCATCCCCGA TCGCCGCACC ATCATGGTCC 
    AAGAATTCTT GCTCATATCG CCGTGCAACG TCTGAAGAGG TGTTCAATCC
    GGACGAACAA GATGCAGCAG AGCCGGCAGG ACGTGGACGA GCATGTCGCC
    GAGCTCCGCG GCGAGCTGCG CAAGGCGCGC GAGGAGCGAG ACCGCGCGTA
    CCGCGTCCTG GAGGTGAGCG AGTGGAAGGC GCTGGCGTCG GCCAACGACC
    GCACCACCAT AGAGACGCTC GAGGCGGAGC TCGACGCGTC CAGGGAGTCC
    GAGAAGCGGA TGCTCGAGTC CCTGGCGATG CAGACGAAGC AGCTCGAGAT
    GACCAAGATC GAGCTCGAGG AGGCCAGGCT GGAGAACGCG TCGCTGCGTG
    AGACCATCCA GAGGCTCGAG GCCATAGCGG TGCCCGTCGC GACGACGCCG
    AGAGGAAGGT ACGATCGCGA CTACCAGAGG GTTCACGGCG AGCTGCGGAT
    GGCGCTGGTG GCGGAGGACA AGAACAAGAA GGCGATGGAG GAGCTGGTGC
    TGGCACTCAA GGAGGTGAAC GGGGAGCTGC ACACGACGCG GCAGCTGCTG
    GCGCGGTCGC AGCACGAGGC CGAGACGGCG CGGCTGGAGT CGGACCGGCT
    GCACGTCTCG CTCAAGCGCA AGGACGACAA GCTCCGCGCG CTGTCGGAGG
    AGGTGGCCAG GCTGCGCGCC GACGCCGAGG AGTCGTTCGC GGCGTGGCGG
    GGCAAGGAGG CCGGGTTCAC GTCGTGCATG AAGTCCACCG AGTCCGAGCT
    CGCCGAGACG CGGCGCGAGA ACGCGCGCCT CCTGGAGTCG CAGCGGTCCG
    GGCGGGACGA GATCGCCAAG CTGCGCGACA TCCTGAGGCA GGCCGTCAAG
    GACACCAAGG TCGTGAAGGA GGCGCTGGAG GAGGCGAGGG GCGAGAACGC
    CGCGCTCAAG GAGATGCTCG GCGACAAGGA CACCGCCATC AAGTGCACCA
    AGCAGGAGCT CGAGTGCCTC CGGGTGACGG AGGCGGCGGC GCGCGACAGC
    GTCAAGGAGC TGCAGAGCCT GCTCGTCGCC ACGTCGTCGA GCCCCACGGC
    CGCCGGCATG AAGCTATCCG CGTCGCCGAG CCCCACAGCT TCCGGGATAA
    AGCTGGACAT GGAGGATTCC TCGTCGTCGC ACGGGTCGAG AGAACTGCAC
    GGGCTGATCA AGTGCCACTC GGAGGCGAGG GTGAAGCCGC CGGCGGGGCT
    CACCCTACCG CGGCGGAGGT CGGATAACTT CGAAGGATCG GTGTACGACA
    TATTCGGGTC GATGGAAGAT CAGAAGAGCG AGCTAAGCGC GTTCTCGACA
    ATGCCGAGGT CGTTGCCCGC ACGGCGGCGG GTGATGATGC GCAAGGTTGG
    CAGCTTGTTC CGGTTTAAGA GCTTCAGTAT CAAGTAGTAG CTGCTACTGC
    CGAGATTCGG GGCC

    Gene models with high sequence identity

    1. AT4G40020.1 [+] show detail - Myosin heavy chain-related protein
      E-value: 6e-36; Score: 149.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT4G40020.1

    Model type
    Protein coding
    Short Description
    Myosin heavy chain-related protein
    Computational Description
    Myosin heavy chain-related protein; BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G16730.1); Has 160438 Blast hits to 85353 proteins in 3205 species: Archae - 2021; Bacteria - 26641; Metazoa - 65466; Fungi - 13044; Plants - 8368; Viruses - 589; Other Eukaryotes - 44309 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR