K21401

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21401

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K21401

Determination of introduced cDNA(s)

  • J023004J18 - Rice Full-length cDNAs - Original: J023004J18

    full reading [+] show sequence

    Nucleotide sequence: J023004J18 - full reading
    GATCCCCATC GGCGACCACA GCAACAGGAT GAAGCTGGTA CAAAGGGAGG 
    CGGAGAAGCT GGCGCTGCAC AATGCAGGGT TTTTGGCCCA GAAGCGCCTC
    GCACGGGGGC TCCGCCTCAA CTACACGGAG GCCGTCGCGC TCATCGCCGC
    CCAGATTCTT GAGTTTGTTC GTGATGGAGA CAGAACTGTG ACAGACTTGA
    TGGACTTAGG AAAACAACTG CTGGGAAGGA GGCAAGTTCT TCCAGCTGTT
    CCACAACTTT TAGAAACTGT ACAGGTTGAA GGAACATTTA TGGATGGAAC
    AAAACTAATT ACTGTACATG ATCCTATTTC TTCTGATGAT GGAAATTTGG
    AGCTAGCACT GCATGGTTCT TTCCTCCCAG TACCTTCACT TGAAAAGTTT
    TCTTCGGTTG GTGTGGACGA CTTTCCTGGC GAAGTACGTT TTTGCTCTGG
    TCACATAGTC CTCAATCTTC ATCGCAGGGC TTTAACTCTG AAGGTTGTTA
    ACAAGGCAGA CAGACCTATT CAGATTGGGA GTCATTACCA CTTCATAGAG
    GCCAATCCAT ACCTTGTTTT TGATAGACAA AGAGCTTATG GCATGAGACT
    GAACATACCA GCTGGCACAG CTGTCCGTTT TGAGCCAGGG GATGCAAAAA
    CGGTTACACT TGTAAGCATT GGTGGTCGTA AAGTGATCAG GGGTGGAAAT
    GGAATTGCTG ATGGTGCTGT CAACAGATCT CAGCTTAATG AGGTAATGGA
    AAAGGTTATT GCAAATGGTT TTGGGCATGA AGATTATCCA GATTCAAGTG
    AAGGTATTAT TGGTGATGGC ACACATGACT ACAGTGTTGA TCATGAGAAA
    TATGCAAGCA TGTATGGGCC TACAACTGGT GACAAGATTA GACTTGGTGA
    CACTGACCTT TTTGCGGAGA TTGAAAAGGA CTATGCCATC TATGGTGATG
    AGTGCATATT TGGAGGCGGA AAGGTTCTAC GTGATGGAAT GGGACAGTCG
    GCAGGGTATC CAGCCTCAGA TTGCCTGGAC ACAGTTGTAA CAAATGCTGT
    TGTGATTGAC TATACAGGAA TATACAAAGC TGACATTGGT ATAAATGGTG
    GACTTATCGT TGCTATTGGG AAGGCTGGAA ACCCTGATGT CATGGACATG
    GATGGTGTTA ATGAAGAGAT GATTGTGGGG GTTAATACTG AAGTTATTGC
    TGCTGAAGGC ATGATTGTTA CTGCTGGTGG AATTGATTGC CATGTTCACT
    TCATATGCCC TCAGTTGGCA GAAGAGGCAA TTGCAAGTGG CATCACAACA
    TTGGTGGGAG GTGGAACTGG ACCAGCACAT GGAACTTGTG CCACAACTTG
    CACCCCTTCA CCATCTCACA TGAAACTAAT GCTACAGTCC ACTGATGAAT
    TACCAATCAA TATGGGATTC ACAGGCAAGG GAAATACTAC AAAACCTGAT
    GGATTGGCTG AGATCATTAA GGCAGGAGCA ATGGGCTTGA AGTTGCATGA
    AGATTGGGGA AGCACCCCAG CTGCGATAGA TAACTGTTTA TCTGTCGCAG
    AAGCTTTTGA TATCCAGGTA AATATCCACA CAGACACCTT AAATGAGTCA
    GGCTGTGTGG AGCATACAAT TGCCGCATTT AAAGATAGGA CAATACATAC
    ATATCATAGT GAAGGAGCAG GTGGTGGTCA TGCTCCAGAC ATTATCAAAG
    TATGTGGAGT GAAAAATGTG TTACCCTCTT CAACAAATCC AACTCGGCCA
    TTTACTTTGA ACACTGTAGA TGAGCACCTT GATATGCTGA TGGTCTGCCA
    TCACCTCGAT AGAAATATCC CAGAAGATGT AGCATTTGCC GAGTCTAGAA
    TTCGAGCTGA AACAATAGCT GCTGAGGATA TCTTGCATGA CATGGGAGCA
    ATCAGTATCA TATCATCCGA TTCGCAGGCT ATGGGGCGCA TTGGAGAGGT
    GATTACTCGG ACATGGCAAA CTGCAAATAA GATGAAGAGA CAGAGAGGTA
    GATTACCTAT ATCCAGTTCC CCCGATGCTG CAGAGGACAA TGACAATTTC
    CGGATAAGAA GATACATAGC TAAATACACC ATAAATCCTG CTATAGTGAA
    TGGCTTTTCT GATTTTGTTG GCTCTGTTGA GGTGGGAAAA TTAGCTGACC
    TTGTTATTTG GAAACCTTCT TTCTTTGGAG CAAAACCAGA AATGGTTATA
    AAGGGTGGTG CTATTGCATG CGCTAATATG GGTGATCCAA ATGCTAGCAT
    TCCAACACCT GAACCGGTTA TGATGCGACC TATGTTTGGT GCATTTGGAG
    GGGCTGGAAG TGCCAACTCT ATAGCATTTG TGAGCAAGGC TGCTAAAGAA
    GCTGGCGTTG CAGTGCAGTA CAAGCTGGGA AAGAGGGTGG AAGCTGTAGG
    TCGCGTTCGT GGTTTGACAA AGCTGAATAT GAAACTAAAC GATGCACTTC
    CGAAAATTGA TGTCGATCCT GAAACCTACA CGGTTACTGC TGATGGAGAG
    GTTTTGAGAT GTCAACCAAC ACCCACAGTA CCACTATCTC GGAATTACTT
    CCTCTTTTAG ACAACTTTAG TGAACCAGCC TTTCTTAATT AGGGTTAATG
    CATGCATTTG GTCTCTCTCT TGTATCCTTT TCAATAATAT GACTTGTAAA
    CTTAAAGCTT TTTATGTGAG TTTTCCTTCA CAGGTGCAAT AAGGATAACT
    TTTGGCCGC

    Gene models with high sequence identity

    1. AT1G67550.1 [+] show detail - urease
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Urease, alpha subunit, C-terminal 221.441
    Gene3D Urease, alpha/gamma subunit 6.5e-36
    Gene3D Urease, beta subunit 5.1e-50
    Gene3D no description 2.8e-184
    superfamily Metallo-dependent hydrolases 8.5e-190
    superfamily Metal-dependent hydrolase, composite domain 1.4e-85
    superfamily Urease, beta subunit 5e-53
    superfamily Urease, alpha/gamma subunit 8.3e-44
    HMMTigr Urease, alpha/gamma subunit 3.9e-36
    HMMTigr Urease, beta subunit 1.4e-38
    HMMTigr Urease, alpha subunit 0
    BlastProDom Urease, alpha/gamma subunit 8e-46
    FPrintScan Urease, alpha subunit, core 1.6e-32
    FPrintScan Urease, alpha subunit, core 1.6e-32
    FPrintScan Urease, alpha subunit, core 1.6e-32
    FPrintScan Urease, alpha subunit, core 1.6e-32
    PatternScan Urease, alpha subunit, conserved site 0
    PatternScan Urease, alpha subunit, conserved site 0
    HMMPIR Urease 0
    HAMAP Urease, alpha subunit 54.639
    HAMAP Urease, beta subunit 28.472
    HMMPfam Amidohydrolase 1 3.2e-62
    HMMPfam Urease alpha-subunit, N-terminal 5.2e-52
    HMMPfam Urease, beta subunit 2.5e-41
    HMMPfam Urease, alpha/gamma subunit 1.2e-40

    See the detailed result >

    AT1G67550.1

    Model type
    Protein coding
    Short Description
    urease
    Curator Summary
    Encodes a nickel-containing urea hydrolase involved in nitrogen recycling. It requires three urease accessory proteins for its activation.
    Computational Description
    urease (URE); CONTAINS InterPro DOMAIN/s: Urease, alpha subunit (InterPro:IPR005848), Urease, alpha subunit, conserved site (InterPro:IPR017950), Amidohydrolase 1 (InterPro:IPR006680), Urease, alpha/gamma subunit (InterPro:IPR002026), Urease, alpha subunit, core (InterPro:IPR017952), Metal-dependent hydrolase, composite domain (InterPro:IPR011059), Urease, beta subunit (InterPro:IPR002019), Urease (InterPro:IPR008221), Urease, alpha subunit, C-terminal (InterPro:IPR017951), Urease alpha-subunit, N-terminal (InterPro:IPR011612); Has 10097 Blast hits to 10094 proteins in 1139 species: Archae - 93; Bacteria - 7117; Metazoa - 16; Fungi - 228; Plants - 47; Viruses - 0; Other Eukaryotes - 2596 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR