K21401

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21401

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K21401

Determination of introduced cDNA(s)

  • J023004J18 - Rice Full-length cDNAs - Original: J023004J18

    full reading [+] show sequence

    Nucleotide sequence: J023004J18 - full reading 
    GATCCCCATC GGCGACCACA GCAACAGGAT GAAGCTGGTA CAAAGGGAGG 
    CGGAGAAGCT GGCGCTGCAC AATGCAGGGT TTTTGGCCCA GAAGCGCCTC 
    GCACGGGGGC TCCGCCTCAA CTACACGGAG GCCGTCGCGC TCATCGCCGC 
    CCAGATTCTT GAGTTTGTTC GTGATGGAGA CAGAACTGTG ACAGACTTGA 
    TGGACTTAGG AAAACAACTG CTGGGAAGGA GGCAAGTTCT TCCAGCTGTT 
    CCACAACTTT TAGAAACTGT ACAGGTTGAA GGAACATTTA TGGATGGAAC 
    AAAACTAATT ACTGTACATG ATCCTATTTC TTCTGATGAT GGAAATTTGG 
    AGCTAGCACT GCATGGTTCT TTCCTCCCAG TACCTTCACT TGAAAAGTTT 
    TCTTCGGTTG GTGTGGACGA CTTTCCTGGC GAAGTACGTT TTTGCTCTGG 
    TCACATAGTC CTCAATCTTC ATCGCAGGGC TTTAACTCTG AAGGTTGTTA 
    ACAAGGCAGA CAGACCTATT CAGATTGGGA GTCATTACCA CTTCATAGAG 
    GCCAATCCAT ACCTTGTTTT TGATAGACAA AGAGCTTATG GCATGAGACT 
    GAACATACCA GCTGGCACAG CTGTCCGTTT TGAGCCAGGG GATGCAAAAA 
    CGGTTACACT TGTAAGCATT GGTGGTCGTA AAGTGATCAG GGGTGGAAAT 
    GGAATTGCTG ATGGTGCTGT CAACAGATCT CAGCTTAATG AGGTAATGGA 
    AAAGGTTATT GCAAATGGTT TTGGGCATGA AGATTATCCA GATTCAAGTG 
    AAGGTATTAT TGGTGATGGC ACACATGACT ACAGTGTTGA TCATGAGAAA 
    TATGCAAGCA TGTATGGGCC TACAACTGGT GACAAGATTA GACTTGGTGA 
    CACTGACCTT TTTGCGGAGA TTGAAAAGGA CTATGCCATC TATGGTGATG 
    AGTGCATATT TGGAGGCGGA AAGGTTCTAC GTGATGGAAT GGGACAGTCG 
    GCAGGGTATC CAGCCTCAGA TTGCCTGGAC ACAGTTGTAA CAAATGCTGT 
    TGTGATTGAC TATACAGGAA TATACAAAGC TGACATTGGT ATAAATGGTG 
    GACTTATCGT TGCTATTGGG AAGGCTGGAA ACCCTGATGT CATGGACATG 
    GATGGTGTTA ATGAAGAGAT GATTGTGGGG GTTAATACTG AAGTTATTGC 
    TGCTGAAGGC ATGATTGTTA CTGCTGGTGG AATTGATTGC CATGTTCACT 
    TCATATGCCC TCAGTTGGCA GAAGAGGCAA TTGCAAGTGG CATCACAACA 
    TTGGTGGGAG GTGGAACTGG ACCAGCACAT GGAACTTGTG CCACAACTTG 
    CACCCCTTCA CCATCTCACA TGAAACTAAT GCTACAGTCC ACTGATGAAT 
    TACCAATCAA TATGGGATTC ACAGGCAAGG GAAATACTAC AAAACCTGAT 
    GGATTGGCTG AGATCATTAA GGCAGGAGCA ATGGGCTTGA AGTTGCATGA 
    AGATTGGGGA AGCACCCCAG CTGCGATAGA TAACTGTTTA TCTGTCGCAG 
    AAGCTTTTGA TATCCAGGTA AATATCCACA CAGACACCTT AAATGAGTCA 
    GGCTGTGTGG AGCATACAAT TGCCGCATTT AAAGATAGGA CAATACATAC 
    ATATCATAGT GAAGGAGCAG GTGGTGGTCA TGCTCCAGAC ATTATCAAAG 
    TATGTGGAGT GAAAAATGTG TTACCCTCTT CAACAAATCC AACTCGGCCA 
    TTTACTTTGA ACACTGTAGA TGAGCACCTT GATATGCTGA TGGTCTGCCA 
    TCACCTCGAT AGAAATATCC CAGAAGATGT AGCATTTGCC GAGTCTAGAA 
    TTCGAGCTGA AACAATAGCT GCTGAGGATA TCTTGCATGA CATGGGAGCA 
    ATCAGTATCA TATCATCCGA TTCGCAGGCT ATGGGGCGCA TTGGAGAGGT 
    GATTACTCGG ACATGGCAAA CTGCAAATAA GATGAAGAGA CAGAGAGGTA 
    GATTACCTAT ATCCAGTTCC CCCGATGCTG CAGAGGACAA TGACAATTTC 
    CGGATAAGAA GATACATAGC TAAATACACC ATAAATCCTG CTATAGTGAA 
    TGGCTTTTCT GATTTTGTTG GCTCTGTTGA GGTGGGAAAA TTAGCTGACC 
    TTGTTATTTG GAAACCTTCT TTCTTTGGAG CAAAACCAGA AATGGTTATA 
    AAGGGTGGTG CTATTGCATG CGCTAATATG GGTGATCCAA ATGCTAGCAT 
    TCCAACACCT GAACCGGTTA TGATGCGACC TATGTTTGGT GCATTTGGAG 
    GGGCTGGAAG TGCCAACTCT ATAGCATTTG TGAGCAAGGC TGCTAAAGAA 
    GCTGGCGTTG CAGTGCAGTA CAAGCTGGGA AAGAGGGTGG AAGCTGTAGG 
    TCGCGTTCGT GGTTTGACAA AGCTGAATAT GAAACTAAAC GATGCACTTC 
    CGAAAATTGA TGTCGATCCT GAAACCTACA CGGTTACTGC TGATGGAGAG 
    GTTTTGAGAT GTCAACCAAC ACCCACAGTA CCACTATCTC GGAATTACTT 
    CCTCTTTTAG ACAACTTTAG TGAACCAGCC TTTCTTAATT AGGGTTAATG 
    CATGCATTTG GTCTCTCTCT TGTATCCTTT TCAATAATAT GACTTGTAAA 
    CTTAAAGCTT TTTATGTGAG TTTTCCTTCA CAGGTGCAAT AAGGATAACT 
    TTTGGCCGC

    Gene models with high sequence identity

    1. AT1G67550.1 [+] show detail - urease
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Urease, alpha subunit, C-terminal 221.441
    Gene3D Urease, alpha/gamma subunit 6.5e-36
    Gene3D Urease, beta subunit 5.1e-50
    Gene3D no description 2.8e-184
    superfamily Metallo-dependent hydrolases 8.5e-190
    superfamily Metal-dependent hydrolase, composite domain 1.4e-85
    superfamily Urease, beta subunit 5e-53
    superfamily Urease, alpha/gamma subunit 8.3e-44
    HMMTigr Urease, alpha/gamma subunit 3.9e-36
    HMMTigr Urease, beta subunit 1.4e-38
    HMMTigr Urease, alpha subunit 0
    BlastProDom Urease, alpha/gamma subunit 8e-46
    FPrintScan Urease, alpha subunit, core 1.6e-32
    FPrintScan Urease, alpha subunit, core 1.6e-32
    FPrintScan Urease, alpha subunit, core 1.6e-32
    FPrintScan Urease, alpha subunit, core 1.6e-32
    PatternScan Urease, alpha subunit, conserved site 0
    PatternScan Urease, alpha subunit, conserved site 0
    HMMPIR Urease 0
    HAMAP Urease, alpha subunit 54.639
    HAMAP Urease, beta subunit 28.472
    HMMPfam Amidohydrolase 1 3.2e-62
    HMMPfam Urease alpha-subunit, N-terminal 5.2e-52
    HMMPfam Urease, beta subunit 2.5e-41
    HMMPfam Urease, alpha/gamma subunit 1.2e-40

    See the detailed result >

    AT1G67550.1

    Model type
    Protein coding
    Short Description
    urease
    Curator Summary
    Encodes a nickel-containing urea hydrolase involved in nitrogen recycling. It requires three urease accessory proteins for its activation.
    Computational Description
    urease (URE); CONTAINS InterPro DOMAIN/s: Urease, alpha subunit (InterPro:IPR005848), Urease, alpha subunit, conserved site (InterPro:IPR017950), Amidohydrolase 1 (InterPro:IPR006680), Urease, alpha/gamma subunit (InterPro:IPR002026), Urease, alpha subunit, core (InterPro:IPR017952), Metal-dependent hydrolase, composite domain (InterPro:IPR011059), Urease, beta subunit (InterPro:IPR002019), Urease (InterPro:IPR008221), Urease, alpha subunit, C-terminal (InterPro:IPR017951), Urease alpha-subunit, N-terminal (InterPro:IPR011612); Has 10097 Blast hits to 10094 proteins in 1139 species: Archae - 93; Bacteria - 7117; Metazoa - 16; Fungi - 228; Plants - 47; Viruses - 0; Other Eukaryotes - 2596 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR