K21402

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21402

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Original: K21402

Determination of introduced cDNA(s)

  • J023073D03 - Rice Full-length cDNAs - Original: J023073D03

    full reading [+] show sequence

    Nucleotide sequence: J023073D03 - full reading 
    GCTCCGTGTT TGCGTTGCGT CTCCTCCTCC CGCACGGCTC GCTCCCTGCC 
    CACTCCTCCT CCTCTCCTCT CCTCCTCCTG CTGCCGTCCA CGCGACACCA 
    CCGAGCGTCG CCTTCGTTCT TCCTCCGCCT TGCCCTTCCC CGTACGTCCT 
    GCTCTTGCGG AGGGAGGTGT TTCGCTCCGG TTCCTCGCCG TAGCAGCAGC 
    AGCGAGGTGA TACCTTTAGT CTGGCAAACA TAAAATATGG TTAAGATAAT 
    GGATAATCAG TCATCGATTG AAGAACTGGA TGAACCATTA GGGAGAGTTC 
    CAATACTTTC ATATGGTTCT GGGCATATGC TAAATGACAT CACTTCTTCA 
    TGTTGGTTTA CTTATTTGCT GGTTTTCTTG ACAGATATTG GGCTTAGTCC 
    AAGTGATGCT GCTGTTGTCA TGCTTTCTGG TCAATTGGCA GATGGCTTCG 
    CAACAATCTT CGTTGGAGAA CTGATTGATC GCTTTGGACA TTTTAAACTG 
    TGGCATGCAG GAGGATCCAT TTTAGTAGCA ATTTCCTTCT CATCTGTTTT 
    TGGTAGCTGT TTGCCTTGCA AACTTACGGG AACTATTTCA TCTACAATGG 
    AGACTGTTGG ATATAGCACA TTCGCTGCTA TTTTCAATGT TGGCTGGGCA 
    GTTACTCAGG TCTCTCATAT GTCAATGGTG AACTGCATGA CATCAAACCC 
    AACAAGTCGG GTTGCATTAG TAAGCTGCCG TAATGCCTTC ACAATGATCG 
    CAAATCTTAG CCTGTATGGC ATTGCTTTGT TGATATTTAG TCTACGTCAG 
    TCAGTGAGCG TGATAGTTCA GTATCGATGG ATAGCATATG TGTCCATTGC 
    CCTTGGATCT TGTTTCGTCG TTGTGTTCTT GATTGGAACG GAAGAGCCAG 
    GGTTAAATCA GCATTGCCAG AATAAGAGAC TTTCCAGGAT TTCATGGACC 
    CACTGGTTCA AGAAAGTATT GTACTACCAA GTTGCTCTAG TATACATGTT 
    TACTAGATTG GTTACCAATG TTTCACAGGC ACTTCTTGCT TTCTACGTCA 
    TAAATGATTT GGAAATGCCA CAATCATCCA AAGCATTGGT ACCTGCTATT 
    ATCTATGTCT GCAGCTTGAT AGTATCTGTC ATATTACAGG AAACTAGATG 
    GTCAAGTTGG CGTTTAAAAA ATTACTTTTC TGCTGGGGCC ATGCTTTGGA 
    TATTGTCTGG TGTTGGAATT GTTGTTCTAC CAAGTGGAAT GCACAACTTC 
    ATGTATGCAC TATCAATCAC AATAGGAGTT GCCAATGCTC TTATGACAGT 
    AACAAGTATC AGCATGGAAG GAATTTTAGT AGGTGAAGAT CTAAATGGTT 
    GTGCTTTTGT GTATGGCTCA TTAAGTTTTG TTGACAAAGT GTCATGCGGA 
    CTAGCTCTGT ATATTCTTGA GTCCTATCAA GGAAGTACCA ATACCAGACA 
    GAACCTAGAG TTGGCATTTG GTTATTCAGT TACAAGACTT GGTTTGGGGT 
    TAGTCCCAGC TGCCTGTTCA CTGCTCTCAG CCATAATAGC TTATACGATG 
    GACCTACCTG ACACTCGGCG AAGACCTTTA GTTGAACCTC TTCTCGCATA 
    ACTCTGCTGG TAGCACTTCC ATTGCAACTG TATATATGTC CAACGGCCAA 
    TGACTCCACT GCTGGAGGCT GGAGCTATTA ACAACAGTAC AGTTATACGA 
    CTCGAAAGGA AAGAAACTCG GACATTGTCA ATTCATTTTG ACTTGGTCTG 
    AAATTCTGAA TTAAGTTATA GATGACACAG TGAAAGGTAC TCAGCAACGA 
    GTTGAGTATG TACCAAAAGT AGCATGGGAG TACAATCCTG TGTAAGCTAA 
    TCCAAAATCC CCTTACAAAT GTAGCCTAGC CGCATTGTTC ACAAGAATAC 
    ATAGCTTGTA TGCTAATTTT ATATTTATTC GCTTTGGATG TAATTGAATT 
    ACCATTTAGC TATTTTTACT AAAATAATGA ATTGGTCTTT TTATTGCTTC 
    GC

    Gene models with high sequence identity

    1. AT2G44280.2 [+] show detail - Major facilitator superfamily protein
      E-value: 1e-166; Score: 583.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G44280.2

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G60070.1); Has 1336 Blast hits to 1323 proteins in 437 species: Archae - 0; Bacteria - 1063; Metazoa - 130; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR