K21421

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21421

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21421

Determination of introduced cDNA(s)

  • J013153E18 - Rice Full-length cDNAs - Original: J013153E18

    full reading [+] show sequence

    Nucleotide sequence: J013153E18 - full reading 
    GGAAAGCAAC TCCACTCCGC CTTCCGCCGC CGCCGCAACA CCATCAAGAA 
    GATGGCGGCG GACTCGCTGC TGGACATGTC CCTCGACGAC CTCATCACCA 
    ACAAGTACAA GCGCCGCTCC CGTCCAGGTC CAGCGCCCTC TGCCCGCCGC 
    TCCCACTCCC GCGCCGCCAC CCGCTCCGCT GCCGCTCCCT ATCACGCCAT 
    CACCTTTCAG GTATAGTTTC TCTTTCTTTT TCTTGATTTC TCGCCTGACC 
    CAACGACCAC GATCTATTCT TCCTAGGCGC CGCCCACGGC CTACGTCCAC 
    CCGACGCCCG CGGCCAACGT CGAGACCGGC ACCAAGCTCT ACATCTCCAA 
    CCTCGACTAC GCCGTCTCCA ACGAGGACAT CAAGGAACTC TTCTCTGAGG 
    TTGGCGATGT CAAGCGTTAC TCTATTAACT ATGACAGGAG TGGAAGATCC 
    AAGGGAACTG CAGAGGTTGT ATTTTCCAGA AAATCTGACG CCCTGGCTGC 
    TGTTAAGAGG TACAACAATG TGCAGCTGGA TGGCAAACCT ATGAAACTTG 
    AGCTCATTGG TATAAATATT GAGCCACCAC CACCTGCTAT TTTTGGTTTC 
    GCTGCACCAG CTGGATACTT CGATTTTCCT CCCAAAAGGG GTGGAAGAGG 
    ATGGCCTCGG GGCAGGGGTG GATTTGGTGG GCGTGGTCGG GGTCATGTGG 
    GTCGTGGGCG AGGGAGGGGA GACCGTGGAA GTCGGAAGAT TTCTGCTGAA 
    GACCTGGATG CTGACTTGGA CAAGTACCAT GCGGAAGGAA TGCAAATGAG 
    CTAGATGACC CTCACGCTTT GTTGCCTTGC CTTGATTGCA TTAGGTAGAG 
    ACAGGGGGAC AAACTAGTAG GCCTTCCTTG GTCTCCTTGT TAGTATTTTG 
    TAGGGATAGA TGCAGACCAA CATATGTATA CTTTGTTTAG ATGGTGTCAT 
    AATTTTGAGC AGGGAATGGC TAAGCTTAAC CTGGTAGGTA GAAGCTAGCT 
    CATAATATGT AACACGGAGG GAGCACAACT TTGAACTTTT ATAGCTAGTG 
    TTGAACTTTT AGCTAGTGTG GGACTGTGGG TTGATGGACA CACAAGCAAA 
    GCAAGCATGC AGCTTGGCAG CCTGGCAAGA GGATTGAATT GATT

    Gene models with high sequence identity

    1. AT5G02530.2 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 6e-36; Score: 148.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Nucleotide-binding, alpha-beta plait 5.4e-22
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 2e-55
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 2e-55
    superfamily RNA-binding domain, RBD 1.8e-21
    ProfileScan RNA recognition motif, RNP-1 16.244
    HMMPfam RNA recognition motif, RNP-1 5.5e-17
    HMMSmart RNA recognition motif, RNP-1 1.5e-19

    See the detailed result >

    AT5G02530.2

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G59950.1).
    Link
    InterPro Scan - TAIR