K21422

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low saturation (PATO:0000328) (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21422

Determination of introduced cDNA(s)

J023107N20 - Rice Full-length cDNAs - Original: J023107N20

full reading [+] show sequence

GTGGCATCAC AAGATCATCA ACTAAGCGAA GAACACACAC ACAAACACAA 
ACAGAAAAAC ACAACACATT AAGCTAGCTA GAAGAAGAGA GAAATTAAAG 
AAGCTAGGAG CTAACGATCA GGATGGCTGC TGGCATGGTG GCGACAATGG 
TGCTACTGAC GTGCCTTGCT GCAGGAGGGC TGGTCGTCGG AGCTGAGGAA 
GACGGTGGCG GCGGCGGTCT TGGCCGGCTG GGGTCGCCGG ACTACGGCGA 
CGCGCTGGCG AAGGCCATCC TGTTCTTCGA GGGACAGCGG TCGGGGCGGC 
TGCCGGCGAA CCAGCGAGCG ACGTGGCGCG GGGACTCGGC GCTCACCGAT 
GGCCGTGAAG AAAACGTGAA CCTGACCGGC GGCTACTACG ACGCCGGCGA 
CAACGTCAAG TTCGGGTACC CGATGGCGTT CACGGTGACC CTGCTGGGCT 
GGAGCGCCGT CGAGTACGGC GCCGCCGTCG CGGCGGCGGG GGAGCTCGGC 
AACCTCCGGG CGGCGATCCG GTGGGGCGCC GACTTCCTCC TCCGCGCCCA 
CGCCTCGCCG ACGACGCTCT ACACCCAGGT CGGCGACGGC AACGCCGACC 
ACCAGTGCTG GGAGCGGCCG GAGGACATGG ACACGCCCAG GACGCTCTAC 
AAGATCACCG CCGACTCGCC GGGGTCCGAG GCCGCCGCCG AGGCCTCGGC 
GGCGCTCGCC GCCGCGTACG TCGCGCTCAA GGACGACGGT GACACCGCCT 
TCTCGTCGCG GCTCCTGGCC GCGTCAAGAT CGCTGTTCGA TTTCGCCAAC 
AACTACAGGG GATCATTCCA GTCCTCCTGC CCCTTCTACT GCTCCTACTC 
TGGATTTCAG GATGAGCTCC TCTGGGCCTC AGCGTGGCTC TTCAAGGCGA 
CGCGAGACGC CAAGTACCTC GACTTCCTGA CAAACAACCA AGGATCCAGC 
AACCCTGTCA ATGAGTTCAG CTGGGACAAC AAGTATGCCG GAGCACAGAT 
GCTTGCAGCA CAGGAGTACT TGGGAGGGAG AACACAGCTA GCAAGGTACA 
AGGATAACTT GGATTCCTTT GTATGTGCCC TCATGCCTAA CAGTGGCAAT 
GTGCAGATAA GGACCACTCC TGGCGGACTT CTGTTTACGC GCGATTCGGT 
CAATTTACAG TACACAACAA CTGCGACCCT CGTTCTGTCC ATCTACTCCA 
AGGTGCTCAA GTCTTCTGGC TCCAGGGGAG TTCGCTGTAG CGCTGCAACA 
TTCTCTCCAA ATCAGATCAG CTCATTTGCC ACGTCTCAGG TGGATTACAT 
CCTGGGGAAG AACCCTCTGG GCATGTCATA CATGGTAGGG TTCAGCACAA 
AGTTTCCGAG GCGCATTCAT CACCGTGGCT CGTCCATCCC GTCGATCAAA 
GTTCTCAGCA GGAAGGTCAC CTGCAAGGAA GGGTTCTCAT CATGGTTACC 
GACAAGCGAC CCAAACCCTA ACATCCATGT CGGAGCGATT GTCGGTGGAC 
CAGATGGAAA TGATCAGTTC AGTGACAACA GGGGGGATTC ATCACACTCT 
GAGCCAGCCA CATACATCAA TGCAGCCTTT GTGGGTGCCT GTGCTGCTGC 
AATGGGGCAG AAGCAGGTGG TGAAGCTGGA GGAGCCTGCG GACAACTTAG 
AATCAATGGT ATCAACTTAC TAGAAAAGAG GGATGCAGAA AATATATGCA 
AGAATAAGAT CATTATTATG TATTCATGTG CAACTTCTAT GTGTGAGATT 
GCCTTGTAAC ATCAGTGCTT ACTTGTAATA TATCCCAGCT CCTTATCAGT 
GTGTACAACA TGATAATAAA TAAATACCAT AAGTTCATAC C

Gene models with high sequence identity

AT4G23560.1 [+] show detail - glycosyl hydrolase 9B15
E-value: 5e-148; Score: 521.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Six-hairpin glycosidase-like	9.9e-152
HMMPfam	Glycoside hydrolase, family 9	2.6e-150
Gene3D	Six-hairpin glycosidase	2.9e-142
HMMPanther	Glycoside hydrolase, family 9	2.7e-206
HMMPanther	ENDO-1,4-BETA-GLUCANASE	2.7e-206

See the detailed result >

AT4G23560.1

Model type: Protein coding
Short Description: glycosyl hydrolase 9B15
Computational Description: glycosyl hydrolase 9B15 (GH9B15); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B14 (TAIR:AT4G09740.1); Has 1874 Blast hits to 1863 proteins in 270 species: Archae - 2; Bacteria - 707; Metazoa - 184; Fungi - 17; Plants - 921; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Link: InterPro Scan - TAIR