K21436

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21436

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21436

Determination of introduced cDNA(s)

  • J013151I06 - Rice Full-length cDNAs - Original: J013151I06

    full reading [+] show sequence

    Nucleotide sequence: J013151I06 - full reading
    GGGGCACTCG CTTCTCCACT AGGGTTTCTC GCCGCCGCCG CCGCCGCTCG 
    CCGTCGCCGT CGCCGCCGGA TCAGAGATGA GCGCATCCAG GCCGGATCAC
    CGGCGGCACC ACCCGCCGTT TCTCCGGGAC CTCTCGTCGC CGATCTCCTC
    GGCCGTGCGG CTGCCCCCGG CCTCCCTCCG CCGCGAGACG CAAGGTTCCA
    CCACCCCGCC GCCGCCGCCG CCGCCGCTGC TGTTCCTCGA CGACCTCTCC
    CACCACTCCC CCTCGCCGAG GCCCGCCACC CCACCTCAGG CGGCGGCCAT
    GAGCCCCTCG CCTCCCCCTC CCCACCGCGG CGGCCTCTTC TCCTCCACCC
    CGCTGCGCTC CAATGGGTCC CCCTCCCCGG CCGCGTGGTG GTCCTCCTCG
    AGGGAGGAGA TGGCCAGGGA GGGCTCGCCG GTCGATGGTG TCGTGCAGCC
    GCAGCAGCAG CCGTCTCCGA CGACGGCGTC TGGGCAGCAG TCGCAGCAGC
    AGAAGGTGAC GCTCATCACG CTGCCGCCAC CCAGGGAAGT TGCGCGGCCG
    GAGATGCCGA AGGATTCGAC ACCTTCCGCT GGCCGTGTCG ACGAGGAGGA
    GTGGGTCACC GTTTTTGGTT TTTTACCTGG CGATACCAAC TTGGTACTGA
    GAGAATTTGA GAAGTGTGGT ATAGTCTTGA GACATGTCCC TGGTCCAAGG
    GATGCGAACT GGATGCATAT CCTGTATCAG AGCCGGCATG ATGCACAAAA
    AGCTCTCACC AAGCACGGTC AACAGTTAAA CAGTGTTCTT ATCATCGGTG
    TGAAGCAAGT GGACCCATGG CAGCGGCAGT ACCTGAATGA GAAGACAAAT
    GAGAACTTTC AAGTTGGTGC AACAGATCCA TTTCCATCAC AGCATGTAGC
    ACCAAGTTCA TTTACAACTA GAAATGCACT AGCACCTTTG CCTAGCAATT
    CTATGCCAAA TGGAATCGGC AACGGGAGTG GCCGTGGTGC TTCGGGGGCC
    ATTGCTTCAC CCACAAAATC AGTATTGTCC AAAGTTATGG ACCTGATGTT
    CGGCCTCTAA ATCCTGTTAC CAAGTACTGG CTGTTATTCT TTTGGCTGTT
    CCAAGGCAAA TCGAGGATTA CTGATCATAA CATTTCTTAT TGTTGGGTTT
    TTCGCACCGA AGTGACATTA TTGGTCCACA GAATCTGTAT TGTACCGAGC
    CTAAGATCAT CAGGGTGTCA TACTGGTATA TCACCCGGTC GGTCTGGAGC
    TAGTGTTGAT GGTGTTTCGC TCGTAAGCAT TCAGTGGATC ATCCAATACC
    AAACCATATG GAAATTATGT CCATGGAAAT ATCATCAAGT ATCATCCTGG
    TTTTATACAT ATTGAAATGA TTCTGACCTG TATGTGAATG CATCTTAGTA
    AATTGTTTTC GAATGATTTG ACATGAGAGC CTATATATAT GTTGAATGCG
    TCTT

    Gene models with high sequence identity

    1. AT3G16310.1 [+] show detail - mitotic phosphoprotein N' end (MPPN) family protein
      E-value: 5e-47; Score: 186.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam MPPN 3.5e-22
    HMMPIR Nucleoporin, NUP53 4.8e-175
    HMMPanther SUBFAMILY NOT NAMED 7.2e-72
    HMMPanther FAMILY NOT NAMED 7.2e-72

    See the detailed result >

    AT3G16310.1

    Model type
    Protein coding
    Short Description
    mitotic phosphoprotein N' end (MPPN) family protein
    Computational Description
    mitotic phosphoprotein N' end (MPPN) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: MPPN (InterPro:IPR007846), Nucleoporin, NUP53 (InterPro:IPR017389); Has 220 Blast hits to 220 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 5; Plants - 57; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR