K21506

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21506

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21506

Determination of introduced cDNA(s)

  • J023012O03 - Rice Full-length cDNAs - Original: J023012O03

    full reading [+] show sequence

    Nucleotide sequence: J023012O03 - full reading 
    GAAGTTCCGT GGGCGTCAGG ACCACTCCCT TCCGGCGCGG CGGAGATCGG 
    AATCGGCGGC GATGGCGGCG ACGACGACGA GACCCCTCCC CCTCCTCCTC 
    CTGCTGCTTC TGCCTCCTCT CCTCCTCCTG CTGCTCTCCT TCCACGCCGC 
    CGCCGCCGCC GCCGCCGAGG AGTTCCCGCG CGACGGGCGG GTGATAGAGC 
    TGGACGAGAG CAGCTTCGAG GCGGCGCTGG GCGCCATCGA CTACCTCTTC 
    GTCGACTTCT ACGCGCCATG GTGCGGCCAC TGCAAGCGCC TCGCCCCCGA 
    GTTAGATGAA GCTGCACCGG TGTTGGCAGG ACTGAGTGAG CCCATCATAG 
    TTGCCAAAGT AAATGCTGAC AAGTACAGGA AGCTTGGATC GAAATATGGA 
    GTGGACGGGT TCCCTACACT GATGCTTTTT ATCCACGGGG TCCCCATCGA 
    ATACACTGGT TCAAGAGAAG CTGACTTGCT TGTCCGCAAT CTTAATAAGT 
    TTGTTGCACC TGATGTTTCT ATTCTTGAGT CGGACTCTGC GATCAAGAGC 
    TTTGTTGAGA ATGCTGGCAC GAGCTTTCCA ATGTTCATTG GGTTTGGGGT 
    GAATGAGTCG TTGATTGCTG GTTATGGAGG GAAATACAAG AAAAGAGCAT 
    GGTTTGCTGT TGCAAAAGAT TTTTCTGAGG ACTTCATGGT CACTTATGAT 
    TTTGATAAGG TTCCTGCATT GGTTTCACTT CATCCAAAGT ACAAAGAACA 
    AAGTGTATTT TATGGCCCAT TTGAAGGAAG TTTCTTGGAA GATTTTATAC 
    GGCAATCCCT GCTTCCTTTG ACTGTCCCCA TCAACACAGA GACACTCAAA 
    ATGTTGGATG ATGATGACAG AAAAGTTGTT CTTGCAATTT TGGAGGATGA 
    TTCAGATGAA ACTTCTTCAC AGTTGGTAAA AGTTTTGAGG TCTGCTGCCA 
    ATGCAAACCG TGACTTGGTG TTTGGGTATG TCGGAATCAA ACAATGGGAT 
    GAGTTTGTCG AGACTTTTGA TATTTCCAAG AGCTCACAGC TGCCAAAGCT 
    AATCGTCTGG GATAGAAATG AGGAGTATGA AGTGGTGGAA GGCTCAGAGA 
    AGTTAGAGGA AGGTGATCAA GCTTCTCAAA TAAGCCAATT CCTTGAGGGA 
    TATAGAGCAG GAAGAACAAC AAAGAAGAAA GTCAGTGGCC CATCTTTCAT 
    GGGTTTCCTG AACTCTCTTG TCAGCCTGAA CTCGCTATAC ATTCTTATAT 
    GTGTCTTCGC TCTTCTTGGT GTCATGATAT ACTTTACTGG GCAAGATGAT 
    ACTCCTCAGG TAAGACGAGC TCATGAAGAG TGAAAGAAGC TTACCAAAAG 
    AGGCTATCCA CCAAGAGATA CATATATATA TAGTTCAGAG GTCAGGTTTC 
    AAACTTCCAA GTGATGCAAT CCTGAAGGAC CTGGTTTTAT TGGTTGATTC 
    TGACATTATT GTATCTCTGT CGGCAATTAT CTAGTTGTGC CTTGTGCAGT 
    TGTGCTCTCC TGCGGTTCTG CCTTCTGTTC CTCTGTTTAT TTGTTAATTA 
    GAACTAAAAC TAGCTTCCAC ATGTGCATGA TAGAAAATGT GATTCTTAGT 
    TCAGTTCTAA TTTGAACAGT TCTGTGAAAA ATATTTTTGT TGTCC

    Gene models with high sequence identity

    1. AT1G35620.1 [+] show detail - PDI-like 5-2
      E-value: 1e-140; Score: 497.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thioredoxin-like fold 3.4e-30
    superfamily Thioredoxin-like fold 6.1e-06
    superfamily Thioredoxin-like fold 0.0042
    Gene3D Thioredoxin fold 1e-29
    ProfileScan Thioredoxin-like 13.918
    PatternScan Thioredoxin, conserved site 0
    HMMPanther PROTEIN DISULFIDE ISOMERASE 4.5e-40
    FPrintScan Thioredoxin-like subdomain 1e-06
    FPrintScan Thioredoxin-like subdomain 1e-06
    FPrintScan Thioredoxin-like subdomain 1e-06
    HMMPfam Thioredoxin domain 5.2e-24

    See the detailed result >

    AT1G35620.1

    Model type
    Protein coding
    Short Description
    PDI-like 5-2
    Curator Summary
    Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.
    Computational Description
    PDI-like 5-2 (PDIL5-2); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: PDI-like 1-1 (TAIR:AT1G21750.2); Has 16921 Blast hits to 14897 proteins in 2775 species: Archae - 169; Bacteria - 7975; Metazoa - 3273; Fungi - 1120; Plants - 1363; Viruses - 4; Other Eukaryotes - 3017 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR