K21508

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21508

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21508

Determination of introduced cDNA(s)

  • J033107K19 - Rice Full-length cDNAs - Original: J033107K19

    full reading [+] show sequence

    Nucleotide sequence: J033107K19 - full reading 
    GAGCCGCACT CGCCTCCTCT CCTCCACTCC TCCTCCCGCA TCCGCGGAAA 
    CCCTAGCCTC CTCTCTCTCT CTCCTCGTTC ACTCGTTCCT CGCGCCGCCG 
    CCGCGACCCG CGAGCGGGAG GAGGAGCCAT GGCGCCGACC AAGGGGGAGG 
    GGCCAGCGAT CGGCATCGAC CTCGGGACGA CCTACTCGTG CGTGGGGGTG 
    TGGCAGCACG ACCGCGTCGA GATCATCGCC AACGACCAGG GGAACCGCAC 
    CGCCCCCTCC TACGTCGGGT TCACGGACAC CGAGCGCCTC ATCGGGGATG 
    CCGCCAAGAA CCAGGTCGCC ATGAACCCCA TCAACACCGT CTTCGATGCC 
    AAGCGTCTTA TCGGCAGACG GTTTTCTGAT GCCTCTGTCC AGAGCGATAT 
    CAAGATGTGG CCTTACAAGG TTATTCCTGG CCCAGGGGAT AAGCCTATGA 
    TTGTAGTGCA GTACAAGGGT GAGGAGAAGC AATTCTCTGC CGAAGAAATT 
    TCATCCATGG TTCTTATCAA GATGCGTGAG ATCGCTGAAG CTTACCTAGG 
    GTCAACTGTG AAGAATGCTG TTGTCACTGT TCCTGCATAC TTCAATGATT 
    CCCAGAGGCA GGCAACTAAA GATGCAGGTG TTATTGCGGG TCTTAATGTT 
    ATGCGTATCA TCAATGAGCC AACAGCTGCT GCAATTGCTT ATGGTCTTGA 
    CAAGAAGGCG ACTAGTGTTG GTGAGAAGAA CGTGCTCATT TTTGACCTTG 
    GTGGTGGTAC TTTTGATGTC TCCCTCCTTA CCATTGAGGA GGGTATTTTT 
    GAGGTGAAAG CAACAGCTGG TGACACTCAC CTTGGTGGGG AGGACTTTGA 
    CAACCGCCTG GTGAACCACT TTGTCCAAGA GTTCAAGAGA AAGCATAAGA 
    AGGATATCAG CGGGAACCCC AGGGCTTTGA GGAGGCTCAG AACATCATGT 
    GAAAGGGCAA AGAGGACCCT CTCCTCCACT GCCCAAACTA CTATTGAAAT 
    TGATTCCCTC TTTGAGGGTG TTGATTTCTA TTCCACCATC ACCAGAGCCA 
    GGTTTGAGGA GCTTAACATG GACCTCTTCA GGAAATGTAT GGAGCCTGTG 
    GAGAAGTGCC TGAGGGATGC AAAGATGGAC AAGAGCACTG TCCATGATGT 
    TGTCCTTGTT GGTGGTTCAA CTAGAATCCC TAGGGTTCAG CAGCTTCTGC 
    AGGATTTCTT CAATGGGAAG GAACTCTGCA AGAGCATTAA CCCTGATGAA 
    GCTGTGGCAT ACGGTGCTGC CGTCCAGGCT GCTATCCTTA GTGGAGAGGG 
    GAACGAGAAG GTGCAGGATC TTCTTCTCCT TGATGTGACA CCACTGTCTC 
    TTGGTCTCGA GACAGCGGGA GGTGTGATGA CAGTGCTCAT CCCAAGGAAC 
    ACCACCATTC CTACCAAGAA GGAGCAGGTC TTCTCCACCT ACTCCGATAA 
    CCAGCCTGGT GTGTTGATTC AGGTCTACGA GGGTGAGAGG ACACGGACCA 
    GGGACAACAA TCTCCTTGGC AAATTTGAGC TGTCTGGAAT CCCTCCTGCC 
    CCTAGGGGAG TCCCTCAGAT CACTGTCTGC TTTGACATTG ATGCCAACGG 
    TATCCTGAAT GTGTCTGCCG AAGACAAGAC AACTGGCCAG AAGAACAAGA 
    TAACCATCAC AAATGACAAG GGAAGGCTGA GCAAAGAGGA GATAGAGAGG 
    ATGGTTCAGG ACGCCGAGAA GTACAAGTCC GAGGATGAAG AGCACAAAAA 
    GAAAGTTGAC GCCAAGAATT CCCTGGAGAA CTATGCTTAC AACATGAGGA 
    ACACTATCCA AGACGAGAAG ATTGCTTCCA AGCTGCCAGC TGACGACAAG 
    AAAAAGATTG AGGACGCGGT CGAGCAGGCG ATCCAGTGGC TGGACAACAA 
    CCAGCTCGCT GAGGTTGAAG AGTTCGAAGA CAAGATGAAG GAGCTGGAGG 
    GCCTGTGCAA CCCAATTATT GCCAAGATGT ACCAGGGTGC TGGTGCCGAC 
    ATGGGTGGTG GAATGGACGA TGATGCTCCG GCTGCTGGTG GGAGTGGTGC 
    TGGCCCTAAG ATTGAGGAGG TCGACTAAAT CAATACACCT TCGTATATGT 
    GATGAGAAAA ATATTGATCA TACACCTTTT GTTTTCAAAT CCCAGTTGGC 
    AATCATACCA CTTGGGCTAC TCGTACTTTC TGTTAACTAA AGACTTATTA 
    TCACCTGATG CTTGAGTTTG GACTTCTAGT CTCAGATTCG AACAGACATT 
    CAGTAATGTG ATGATGTTTC AGTTTTTACC AGGTGGCCGC GGCAGAATTA 
    CCCCTTTTGT TTTACTGCTG TATTACAATT GCAATTGATT ATGCTAGGTG 
    GGTTTGGCCC CCGGTTACTT

    Gene models with high sequence identity

    1. AT5G02500.1 [+] show detail - heat shock cognate protein 70-1
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Heat shock protein Hsp70 1.2e-85
    FPrintScan Heat shock protein Hsp70 1.2e-85
    FPrintScan Heat shock protein Hsp70 1.2e-85
    FPrintScan Heat shock protein Hsp70 1.2e-85
    FPrintScan Heat shock protein Hsp70 1.2e-85
    FPrintScan Heat shock protein Hsp70 1.2e-85
    FPrintScan Heat shock protein Hsp70 1.2e-85
    FPrintScan Heat shock protein Hsp70 1.2e-85
    FPrintScan Heat shock protein Hsp70 1.2e-85
    Coil coiled-coil 0
    Coil coiled-coil 0
    Gene3D no description 1.9e-49
    Gene3D no description 8.4e-32
    Gene3D no description 2e-76
    superfamily Actin-like ATPase domain 1.6e-69
    superfamily Actin-like ATPase domain 2.3e-68
    superfamily Heat shock protein 70kD (HSP70), peptide-bind 6.4e-66
    superfamily Heat shock protein 70kD (HSP70), C-terminal s 2.5e-31
    HMMPanther HEAT SHOCK PROTEIN 70 (HSP70) 0
    HMMPanther Heat shock protein Hsp70 0
    HMMPfam Heat shock protein 70 1.5e-275
    HMMPfam Glutamate dehydrogenase, NAD-specific 1.4e-58
    HMMPfam Glutamate dehydrogenase, NAD-specific 5e-08
    HMMPfam Glutamate dehydrogenase, NAD-specific 1.8e-32
    HMMPfam Glutamate dehydrogenase, NAD-specific 2.5e-24
    PatternScan Heat shock protein 70, conserved site 0
    PatternScan Heat shock protein 70, conserved site 0
    PatternScan Heat shock protein 70, conserved site 0

    See the detailed result >

    AT5G02500.1

    Model type
    Protein coding
    Short Description
    heat shock cognate protein 70-1
    Curator Summary
    encodes a member of heat shock protein 70 family.
    Computational Description
    heat shock cognate protein 70-1 (HSC70-1); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to cold, response to virus, response to heat; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: Heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G02490.1); Has 34264 Blast hits to 33945 proteins in 4852 species: Archae - 163; Bacteria - 16558; Metazoa - 3831; Fungi - 1761; Plants - 1266; Viruses - 306; Other Eukaryotes - 10379 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR