K21533

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21533

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K21533

Determination of introduced cDNA(s)

  • J033121I10 - Rice Full-length cDNAs - Original: J033121I10

    full reading [+] show sequence

    Nucleotide sequence: J033121I10 - full reading 
    GGCCTCGTCG GCTTCCTCTC GCCGCACCCA TCGATATCCA TCTCCATCTC 
    ATCTCGCCAC CCAAAACCCT AAACCTCCCT CCCATTTCCG CCGCCGCCGC 
    CATGCAGTCG CTTGCCCTCA CCTCCCCCTC CCTTCCGGCG CCGGCGACCG 
    CATCCGGCCG CCGCCGCCGC CGCCTGGAGC GCATCCGCGC CACCGCGGTG 
    TCCGACGAGC CGAAGCTGAA CAAGTACAGC GCGCGCATCA CGGAGCCCAA 
    GTCGCAGGGG GCGTCGCAGG CGGTGCTCTA CGGCGTGGGG CTCACCGACG 
    CCGACCTCCG CAAGCCGCAG GTGGGCGTCT CCTCCGTCTG GTACGAGGGC 
    AACACCTGCA ACATGCACCT TCTCCGCCTC GCCGAGGCCG TCAGGGACGG 
    CGTCCGCGAG GCCGGCATGG TGGCCTTCCG CTTCAACACC GTCGGGGTCA 
    GCGACGCCAT CTCCATGGGC ACCCGGGGCA TGTGCTACAG CCTCCAGTCG 
    CGCGACCTCA TCGCCGACAG CATCGAGACC GTCATGGGCG CGCAGCACTA 
    CGACGCCAAC ATCTCCATTC CTGGATGCGA CAAGAACATG CCAGGAACAA 
    TAATGGCAAT GGGGCGGCTG AACCGACCAA GTATCATGAT ATATGGTGGA 
    ACTATTAAGC CTGGTCATTT TCAGGGTAAT TCTTATGACA TAGTATCTGC 
    TTTCCAGTGC TATGGAGAAT TTGTTACCGG ATCAATCAGT GATGAGCAAA 
    GAAAGAATGT GCTCCGCAAC TCATGCCCAG GAGCAGGTGC GTGTGGTGGT 
    ATGTACACCG CAAATACAAT GGCATCCGCC ATCGAGACCA TGGGTATGAG 
    CCTTCCGTAC AGTTCTTCAA CCCCTGCTGA AGACCCACTA AAGCTAGAGG 
    AATGCCGTCT TGCTGGGAAG TATCTTTTAG AATTGTTAAA GATGGATTTG 
    AAGCCTAAAG ACATTATCAC TGAGAAATCT TTGCGGAACG CAATGGTCAT 
    TGTCATGGCA CTTGGTGGGT CTACTAATGC TGTTTTGCAT TTAATTGCTA 
    TCGCTAGGTC TGTAGGTCTG CAATTAACTC TTGATGATTT TCAGAAGGTC 
    AGTGACCAAG TTCCTTTCCT TGCGGACCTT AAGCCTAGTG GCAAATATGT 
    CATGGAGGAT CTGCATAAGA TTGGTGGAAC ACCTGCAGTA ATTCATTATC 
    TTCTGGAGCA AGGTCTTCTT GATGGTGATT GTATGACCGT CACTGGGAAA 
    ACTCTAGCGG AAAATGCTAA AATCTTCCCT CCTCTGTCCG AAGGACAGCA 
    AATAATAAGG CCCCTGGACA ACCCAATCAA ATCAACTGGT CATATACAAA 
    TACTTTATGG CAATCTTGCA CCAGAAGGTT CTGTAGCAAA AATTACTGGC 
    AAAGAGGGGA TGTTTTTCTC AGGCCCTGCA CTAGTGTTTG AGGGTGAAGA 
    ATCTATGATT ACAGCTATAT CAGAAAACCC AGCGAATTTC AAGGGGAAGG 
    TAGTAGTGAT ACGAGGAGAA GGACCGAAAG GTGGACCAGG GATGCCTGAA 
    ATGCTGACTC CAACTAGTGC AATAATGGGT GCTGGTCTTG GGAAGGAGTG 
    TGCCCTGCTG ACCGATGGCA GATTTTCTGG AGGATCACAT GGATTTGTTG 
    TAGGCCACAT TTGTCCTGAA GCACAGGAGG GAGGTCCAAT TGGTCTTGTT 
    CAAAACGGTG ACAAAATTAC CATTGATGTT GTGAAGAGAG TAATTGATGT 
    TGAACTGACT GAAGCTGAGC TGGAAGAAAG ACGGAGGAAA TGGACGCCGC 
    CGCCACACAA GGCTGCCCGT GGAGCGCTTT GGAAGTACAC GAAGCTCGTG 
    TCCCCTGCAT CAAGAGGATG CGTCACCGAT GAGTAGATCC TGCTGCTGCT 
    GCTCGAGTAA TAAAAAATAA AAAATAAAAA AGAGGAGGAA TAGGAGGAGG 
    TTTTTGAGGA ACAGTTTGCA TGTAACAGTA GTTCATGGTG GTGGTTGGTG 
    AAGGCTGATT GTGATGGTAG TTCCCTTCAA TAAAATGGCA GTTTCCTAGG 
    TGCTCAAGCA ATGCCGAGGG AACTGCTTGC TGAATAATCC ATTGTCTGTT 
    GCTGTGTTGG

    Gene models with high sequence identity

    1. AT3G23940.1 [+] show detail - dehydratase family
      E-value: 0; Score: 897.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Dihydroxy-acid/6-phosphogluconate dehydratase 1.4e-260
    HAMAP Dihydroxy-acid dehydratase 41.742
    HMMPfam Dihydroxy-acid/6-phosphogluconate dehydratase 2.4e-213
    PatternScan Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site 0
    PatternScan Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site 0
    HMMTigr Dihydroxy-acid dehydratase 4.5e-305

    See the detailed result >

    AT3G23940.1

    Model type
    Protein coding
    Short Description
    dehydratase family
    Computational Description
    dehydratase family; FUNCTIONS IN: copper ion binding, catalytic activity; INVOLVED IN: pollen development; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dihydroxy-acid dehydratase (InterPro:IPR004404), Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site (InterPro:IPR020558), Dihydroxy-acid/6-phosphogluconate dehydratase (InterPro:IPR000581); Has 13943 Blast hits to 13934 proteins in 2322 species: Archae - 210; Bacteria - 7441; Metazoa - 5; Fungi - 304; Plants - 157; Viruses - 0; Other Eukaryotes - 5826 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR