K21537

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21537

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21537

Determination of introduced cDNA(s)

  • J033068D06 - Rice Full-length cDNAs - Original: J033068D06

    full reading [+] show sequence

    Nucleotide sequence: J033068D06 - full reading 
    GAGGAGTCGC CAAGACGTCG TAGGCAACAC CTCCCTTCCC CCCTACCCTT 
    GAACCGAGGC CGAGTCGTGG TCGCCGCGAG TGGAAGGCAA CAACTCTCCA 
    AGGCAGGCAC AGGCAGCAGC AGCAGGAGGA GAGGAGGCAG GCGCGGGCGG 
    CGTGAGCAGC AGCGGCAGCG CCGCATTACA GCCTTGGGAG TAGGAGGAGG 
    AGGAGGCAGC GGATGATGAT CCCTAGGGAA GGGGCGGTGC CGGAGCCCGC 
    GGCGGCGTCC TGATCCCCGA CCGACGATCG CGGCTGCTGC TGTTGCTATT 
    TTTTCAGAGG ATGGAGAATC CTCAGATTGA GATGGGGGCC TTCAAGGCGA 
    ACGGTCCGCA ATTGCAGAAT GGTGGGCTAC GTTCCAGCAT GGTTCAGTCC 
    TGGAACCTGC AGAGATTCGT TGAGAGCGCG CTGCGGAGCA TCAGGATTGT 
    CATATTCACT TCTAAGCTCA ATCTGCTCTT GCCGTTTGGG CCTGCGTCGA 
    TCATTCTACA CTATACTACC AGCAGACATG GATTGGTCTT CCTATTCAGC 
    ATGCTAGGAA TAACACCTTT AGCTGAGCGC TTGGGTTATG CAACTGAGCA 
    GCTCGCAATA TACACTGGTC CAACAGTTGG GGGGCTTCTA AATGCTACGT 
    TCGGAAATGC AACTGAAATG ATCATAGCAA TATATGCTTT GAAAAATGGA 
    ATGATCCGAG TAGTTCAACA ATCATTGCTT GGTTCCATAT TATCAAATAT 
    GTTGTTGGTT ATGGGCTGTG CTTTCTTTGC TGGCGGTATT GTTCATCGGA 
    ACAAGGACCA AGTCTTCAGC AAGGCAACTG CAGTTGTTAA CTCAGGTTTA 
    CTGTTGATGG CTGTCATGGG ACTAATGTTT CCTGCTGTCC TTCACTTCAC 
    GCATTCAGAA GTGAGGCAAG GAGCATCAGA GGTTTCTCTT TCAAGGTTCA 
    GCAGTTGTAT TATGCTTGTG GCATATGCAA GCTATCTCTA TTTCCAACTA 
    AGTGGACGGA ATAATGCTTA TAGTCCAATT GGCAGTGAAG AAATGCCCAA 
    TGAGGATGCA GCAGAGGAAG ATGAAGAATC AGAGATTGGC ATGTGGGAGT 
    CCATAGCATG GCTCGCGATG TTGACATTAT GGGTGTCTAT TCTTTCTGAA 
    TACCTGGTTA ATGCCATTGA GGGGGCATCT GATTCACTGA ACCTACCCGT 
    GGCTTTTATC AGTGTTATTT TGCTTCCTAT TGTGGGAAAC GCTGCTGAAC 
    ATGCTAGTGC AATAATGTTT GCCATGAAAG ATAAACTTGA CATAACACTG 
    GGTGTTGCAA TTGGGTCATC AACGCAGATA TCAATGTTTG TGATTCCATT 
    TTGTGTTGTC ATTGGTTGGA TGATGGGGCA AAAGATGGAC TTGAATTTCC 
    AACTATTCGA AACAGCAACG CTCTTCATAA CAGTACTAGT CGTGGCATTT 
    ATGCTACAGG ATGGTGTTGC GAACTACTTG AAAGGACTTA TGCTGATCTT 
    GTGTTATCTA ATAGTTGCCG CCAGTTTCTT CGTTCACGTT GATCCACAAT 
    CCAGCGATGA TTGATGCCAC GGACACTGTA ATTATTGTAC CAAATACCCT 
    TGAAGCCTTT ACTAATCTTA ATTCTGGTGA GTTGCTCCTC CGTAGCAGAG 
    CTCAGCCTGC TGGCAGGAGC TGGCAGAATG TTGACACGGC CGGGAAAATC 
    ACGTGGTGTC GGTTAGTTTG TCCATGATCT GCAGCAGCAA TTATTGCACG 
    TTGCAATAGT CAAAAGATCT GAAGGGCATC TAGGAGGAGG GGTGGTTGTA 
    ATGTATACAG ATTACAGAAA CAAGGAAATG CAATGCAATG TCGCCCATGT 
    AAAAAGTCTC CTTGCATAGT TGCATTCAAT TAATTCAGTT AATGTGGCCC 
    TGGCCCGTTC TCTCC

    Gene models with high sequence identity

    1. AT3G13320.1 [+] show detail - cation exchanger 2
      E-value: 5e-155; Score: 545.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Sodium/calcium exchanger membrane region 8.2e-22
    HMMPfam Sodium/calcium exchanger membrane region 1.5e-24
    HMMTigr Calcium/proton exchanger 8.5e-139
    HMMTigr Calcium/proton exchanger superfamily 1.9e-112

    See the detailed result >

    AT3G13320.1

    Model type
    Protein coding
    Short Description
    cation exchanger 2
    Curator Summary
    low affinity calcium antiporter CAX2
    Computational Description
    cation exchanger 2 (CAX2); CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: cation exchanger 5 (TAIR:AT1G55730.2); Has 3194 Blast hits to 3028 proteins in 968 species: Archae - 39; Bacteria - 1824; Metazoa - 15; Fungi - 731; Plants - 247; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR