K21541

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21541

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21541

Determination of introduced cDNA(s)

  • J023043E07 - Rice Full-length cDNAs - Original: J023043E07

    full reading [+] show sequence

    Nucleotide sequence: J023043E07 - full reading
    TTTATCCCTG ATAAGATAGG CACAGACCTG CCTATATTGT CACAATTTTT 
    CTACAGAGCA TAAAAGTTGG TGCAATGTGA ATGCACGTGC AATCACTGAC
    CAAACTACCA AACTCATGCT CCTTAGTAGT TCTATCTTCA GGTTGGGTGC
    AATAACTGAT TAATTTATTT TGGTGATTTA TTGTAATTAA GATTGAAGCT
    GTGACAAGAA GGATTTTGAG GATCACTTCA ACTGACGGAG CAGCCAAAAT
    ACTTGTTTTT TCAAGCTGGA ATGATGTTCT TGATGTGCTA GAGCACTCCC
    TTGCCGCTAA CAATATCTCT TATGTTCGGA TGAAAGGAGG AAGAAAATCG
    CAAACAGCGC TTGCCCAGTT CAAAGGTCTG GCAAGTAGTA TAAGTGGAGA
    GAAAGCAAAG AAGTCATTTT CCAAGATGCA ACCTGCTCAA GTATTGCTAA
    TGCTTATCCA GCATGGTGCA AATGGTCTTA ATCTTTTGGA AGCACAACAT
    GTAATATTAG TGGAGCCGTT GTTAAACCCT GCAGCTGAGG CGCAAGCTAT
    CAGCAGGATC CATAGAGTTG GGCAAGACAA AAGCACGTTT ATCCACCGTT
    TTATTGTGAA GAATACTATT GAAGAGAGCA TCTACAAATT AAACAGGGGC
    AGAGCTGTTT GCTCCACGAT ACACCGTAAA TCAAAAAATT TCAAAGATGA
    GCTTGTTTTG ACACTGAAGG ATATTGAGTC TTTATTTCCT GTGGCAACAC
    TTGATCAGCC TTCAGAACAG GAGAATAAGA ATTACGGTGG GGCAGGTGGG
    CATATGAGAA GTTTACCTCC ATCTGTTGCA GCTGGCTTAG CTGCTGAAAG
    GAGGTTATTG GAGCAACATG ACAACCAGCA TTAAGTTATC AGCTGACTTA
    TTCTTTCAAC TGGAACTCGG AGAGGCAATG AAAGAGGTTG AAATAATTGA
    TGCTGTAGAT ATTTTAGTTA ATTGGATTTA TCGATTGCCT TCTTAGTTCT
    AAATTATGTT AAAATTACAG AAGGTAGGGA TATACTTTGG TCTGGAGCTT
    CTCGGATCAT TATATTAGAA TCTGGCATCA GTGATAGAAT GTTTAGGACA
    CCCCCGAGCA TCGGGTATGT ACTTAAGGAG ATGTTGTGAA ATTTAGTTAG
    TTAGCCTGAC AGAAGCATGT GTATCATTGT ATAAAACCCG CCGTCTTATT
    TTCCTTTTGA TTTTTGATAG GTAATAAATA TCCTTAACAT GTGTACATGT
    TTATGAACAT TGCTTTAGTA AATGAAAGAT CAGTTCAGAT CATTTTTGGT
    C

    Gene models with high sequence identity

    1. AT2G40770.1 [+] show detail - zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding
      E-value: 3e-62; Score: 236.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SNF2 HISTONE LINKER PHD RING HELICASE 1.2e-60
    HMMPanther ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATE 1.2e-60
    superfamily P-loop containing nucleoside triphosphate hyd 0.000000016
    ProfileScan DNA/RNA helicase, C-terminal 9.433
    HMMPfam DNA/RNA helicase, C-terminal 0.00011
    HMMSmart DNA/RNA helicase, C-terminal 0.00011

    See the detailed result >

    AT2G40770.1

    Model type
    Protein coding
    Short Description
    zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding
    Computational Description
    zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1); Has 20880 Blast hits to 12947 proteins in 1504 species: Archae - 88; Bacteria - 5732; Metazoa - 4955; Fungi - 5171; Plants - 2134; Viruses - 115; Other Eukaryotes - 2685 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR