K21541

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21541

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21541

Determination of introduced cDNA(s)

  • J023043E07 - Rice Full-length cDNAs - Original: J023043E07

    full reading [+] show sequence

    Nucleotide sequence: J023043E07 - full reading 
    TTTATCCCTG ATAAGATAGG CACAGACCTG CCTATATTGT CACAATTTTT 
    CTACAGAGCA TAAAAGTTGG TGCAATGTGA ATGCACGTGC AATCACTGAC 
    CAAACTACCA AACTCATGCT CCTTAGTAGT TCTATCTTCA GGTTGGGTGC 
    AATAACTGAT TAATTTATTT TGGTGATTTA TTGTAATTAA GATTGAAGCT 
    GTGACAAGAA GGATTTTGAG GATCACTTCA ACTGACGGAG CAGCCAAAAT 
    ACTTGTTTTT TCAAGCTGGA ATGATGTTCT TGATGTGCTA GAGCACTCCC 
    TTGCCGCTAA CAATATCTCT TATGTTCGGA TGAAAGGAGG AAGAAAATCG 
    CAAACAGCGC TTGCCCAGTT CAAAGGTCTG GCAAGTAGTA TAAGTGGAGA 
    GAAAGCAAAG AAGTCATTTT CCAAGATGCA ACCTGCTCAA GTATTGCTAA 
    TGCTTATCCA GCATGGTGCA AATGGTCTTA ATCTTTTGGA AGCACAACAT 
    GTAATATTAG TGGAGCCGTT GTTAAACCCT GCAGCTGAGG CGCAAGCTAT 
    CAGCAGGATC CATAGAGTTG GGCAAGACAA AAGCACGTTT ATCCACCGTT 
    TTATTGTGAA GAATACTATT GAAGAGAGCA TCTACAAATT AAACAGGGGC 
    AGAGCTGTTT GCTCCACGAT ACACCGTAAA TCAAAAAATT TCAAAGATGA 
    GCTTGTTTTG ACACTGAAGG ATATTGAGTC TTTATTTCCT GTGGCAACAC 
    TTGATCAGCC TTCAGAACAG GAGAATAAGA ATTACGGTGG GGCAGGTGGG 
    CATATGAGAA GTTTACCTCC ATCTGTTGCA GCTGGCTTAG CTGCTGAAAG 
    GAGGTTATTG GAGCAACATG ACAACCAGCA TTAAGTTATC AGCTGACTTA 
    TTCTTTCAAC TGGAACTCGG AGAGGCAATG AAAGAGGTTG AAATAATTGA 
    TGCTGTAGAT ATTTTAGTTA ATTGGATTTA TCGATTGCCT TCTTAGTTCT 
    AAATTATGTT AAAATTACAG AAGGTAGGGA TATACTTTGG TCTGGAGCTT 
    CTCGGATCAT TATATTAGAA TCTGGCATCA GTGATAGAAT GTTTAGGACA 
    CCCCCGAGCA TCGGGTATGT ACTTAAGGAG ATGTTGTGAA ATTTAGTTAG 
    TTAGCCTGAC AGAAGCATGT GTATCATTGT ATAAAACCCG CCGTCTTATT 
    TTCCTTTTGA TTTTTGATAG GTAATAAATA TCCTTAACAT GTGTACATGT 
    TTATGAACAT TGCTTTAGTA AATGAAAGAT CAGTTCAGAT CATTTTTGGT 
    C

    Gene models with high sequence identity

    1. AT2G40770.1 [+] show detail - zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding
      E-value: 3e-62; Score: 236.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SNF2 HISTONE LINKER PHD RING HELICASE 1.2e-60
    HMMPanther ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATE 1.2e-60
    superfamily P-loop containing nucleoside triphosphate hyd 1.6e-08
    ProfileScan DNA/RNA helicase, C-terminal 9.433
    HMMPfam DNA/RNA helicase, C-terminal 0.00011
    HMMSmart DNA/RNA helicase, C-terminal 0.00011

    See the detailed result >

    AT2G40770.1

    Model type
    Protein coding
    Short Description
    zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding
    Computational Description
    zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1); Has 20880 Blast hits to 12947 proteins in 1504 species: Archae - 88; Bacteria - 5732; Metazoa - 4955; Fungi - 5171; Plants - 2134; Viruses - 115; Other Eukaryotes - 2685 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR