K21547

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21547

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21547

Determination of introduced cDNA(s)

  • J013099D07 - Rice Full-length cDNAs - Original: J013099D07

    full reading [+] show sequence

    Nucleotide sequence: J013099D07 - full reading 
    TTGGTGCTCG TGCGTAAAAG AAAGAAATCT CCCGTCTCCT CGTCGTTCCT 
    GGCGAGCAGA GCAGGAGAGG GGAGGAGATC CTGATCTGGA AGAAGAAGGA 
    GCTCTTCTCC GAATTTCAGA ACCCTAAACC TCAATACAAG CAACAGTTTG 
    TTTGTTCCCC CAAAGTACCC CCACCAATGT CCCAAGCTGG ATCGGAATCC 
    GCCGCTGCCA AGGAGCCGTC GTTCAAGGAG GGCGAGAGAG TGCTCGCCTA 
    CCACGGCCCG CTCCTCTACG AGGCCAAGGT TCAAAAGTCC GAAAACAAGG 
    AGGATGAGTG GCGGTATCAT GTCCATTATC TTGGTTGGAA TAAGAGGATA 
    CGAGTGAGTG CCTGGAGCCC GGATGACTGA CATATATTTA AATATGACCA 
    ATCCATTTTC TACGTGTGAA TTGAAGTGAT GGCAACACAA ATTTTTTTAA 
    TAGTTGTGCT GGATGAAAAA TTTCACTGAG GCCCTTGACA GTTTAAAAGT 
    GTCTAAGTTG GATTTTGGAC CTTGAGTTGG ATATGAATGA CCTTATGCAT 
    GTTCTAATGT ATTATTTTTT TTCTGGCAGT GCCATATTGT TGTCTACCAC 
    CATGTTTGGG TAGTCTCACA TCTTTGCCCT TACGGTGCAA TTTTTTTTTC 
    TTAATAGTAT TTTCATGAAT CCTGTTGAGG GGCTTGTTTC TATCATTGCA 
    CTGATGCTAT TTAGTTGTCT TTCTGCTCTC CTAATTCAAG TAAACAGTCT 
    TCTTAATATG TTTATTTTCA ATGAGTACAG CTGGGATGAA TGGGTCACAA 
    ATGATCGCTT ACTGAAATTG ACCGACGAAA ATATCCGCAA ACAACAAGAG 
    CTTGAAAAGA GCCAAGTAGT TGACAAAAGC GTAAAATCTG GACGGTCAGC 
    GCAGCATAAG CCAAAAGGCT CTAATGATGC AAAAACTGAT AAAGAAGACA 
    CCAAGATTAT TATCAAGGGG AAGAAACGCA AAAGTCAGCC TGGTGGGACT 
    GAGGAGAAAG AAAGAAAATC ATCTGAGAGT CTCTTCATGT CACATTTTCC 
    TTCAACGCTA AAAAAGCAAC TTGTTGATGA TTGGGAGTTT GTCACGCAGC 
    TGGGTAAGCT TGTGAAGCTA CCTCGGTCCC CCACGGTCGA TGATATTCTA 
    AAGAAGTACT TGGAGCACCG GACAAAGAAG GATAACAAGA TAAATGACTC 
    TTACGCTGAG ATTTTGAAAG GATTGCGATG CTACTTTGAT AAAGCATTGC 
    CTGCAATGCT TTTGTATAAG AAAGAGCGAC AGCAGTACTC TGAAGAGGTT 
    AAAGGCGATG TTTCGCCCTC AACTATATGG AGCTGAGCAT CTACTGCGCC 
    TTTTTGTGAA ATTGCCGGAG CTACTTGCGT CTGTCAACAT GGAAGAAGAT 
    GCACTCAACA AACTACAGCA GAAATTGCTG GACATTCTCA AGTTTCTGCA 
    GAAGAATCAG AGTTCGTTCT TCCTTTCTGC GTATGATGGT GGTTCTAAAG 
    GTACTGATGG GATAAAGACC AAATAGAAGC AAACTGTTGC ATCTGTATGT 
    TGACTGTACT TAACTGTCTC GCTGAGTAAT TTTAATTTTC ATGTGATTG

    Gene models with high sequence identity

    1. AT4G37280.1 [+] show detail - MRG family protein
      E-value: 3e-67; Score: 78.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther TRANSCRIPTION FACTOR MRG\ALP13-RELATED 2.1e-18
    HMMPanther MRG 2.1e-18
    HMMPanther TRANSCRIPTION FACTOR MRG\ALP13-RELATED 7.1e-11
    HMMPanther MRG 7.1e-11
    HMMPanther TRANSCRIPTION FACTOR MRG\ALP13-RELATED 1.3e-41
    HMMPanther MRG 1.3e-41
    HMMPfam MRG 3e-30
    HMMPfam Tudor-knot 6.3e-07
    HMMPfam MRG 3.3e-17
    Coil coiled-coil 0

    See the detailed result >

    AT4G37280.1

    Model type
    Protein coding
    Short Description
    MRG family protein
    Computational Description
    MRG family protein; FUNCTIONS IN: chromatin binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf3/MRG15 subunit (InterPro:IPR017398), MRG (InterPro:IPR008676), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: MRG family protein (TAIR:AT1G02740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR