K21548

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21548

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21548

Determination of introduced cDNA(s)

  • J033127O12 - Rice Full-length cDNAs - Original: J033127O12

    full reading [+] show sequence

    Nucleotide sequence: J033127O12 - full reading
    GGTCGTCATT ACACGCGGAC TCGTCCTCCG CCGCCGCCGC CGCCGCGCAG 
    ACACCTCCTG CCCCGCCGCC GCCGGCGATC TACACCGGGG GCGCGCTTGG
    AGATTTTTTC TATGGCGGGG AGCAGCGAGA GCGACTACTA CTCGGAGGAG
    GAGGAGGAGC TGGGATGGGA GGAGGACGGT CTCGGCAGCG AAGGCGAGGA
    GGAGGACGCG GAGGCGGCGA GGGAGCGGGC GCTGAAGCGG CTGGACGGCC
    TCGGGAAGCG CGGGGTGTGC TACCTCAGCC GCGTCCCTCC CAACATGAAC
    CCGTCCCACG TCCGCCAGAT GCTCTCCAAG TATGGCGAGG TGCAGAGGAT
    TTACCTTGTG CCTGAAGGCC AAGGTCATCG CAAGCACACT AATGTTCGAG
    CGAAGGCGTA CACTGAAGGG TGGATTGAAT TTTCCAAGAA AAGCGTTGCC
    AAGAGGGTGG CTAATCTACT TAACGGTGAA CAAATAGGTG GGAAGAAGAG
    GTCTCCATTT TATTATGACA TTTGGAACAT AAAATATCTC AAGAAATTCA
    AATGGGATGA TCTTGTTGGT GAAATAGCTG AGAAGACTCA TATCAGGGAG
    CAGAAACTAA ACTTGGAGAT AGCAGCTGCA AAGAAACAAC GTGACCACTA
    CTTGTCCAAT GTCGAGAAGT CCCGTACGCT GAAACATATT CAGGAGCGTA
    GGAAAAAGAA ACAGAAGACG GAAGGAGCTG AATTCAATGA AGTCCGAGAA
    GAAAAAATCG CTCGCACAAT TCCGCAAAAG AAACCTGTTG AGGAGACAGA
    CGCCAAAACT AAACCAAAGC TTCCGAAAGA CATTTTAGCC GGAGTATTTG
    GTGGTCCATA GTGAGTTCAT TCATGAATGC TTCCCACCCC TTACCTTGGA
    CTGGAGTATA GCAAACTGAA TGGAGTTGCG CTGAGATAAT CGTCTTCTTC
    ATCCGTTCAT CGTCTGCTTT ATTTTTGTAG ATTAGGTCAT GGTCTTTAGT
    AACTTGGTTC CTACTTCCTA CCTTGAGTAT CTTTTCGTAT TTATGCTGTG
    TTAGGGAAGG TTTTGGGACC TGACGATGAA TGTATGATTG GGGTATTGTC
    AGTGTCATAT TATGCACCCC TGTTTTCTCA GCGATCATGG CTGTAATACT
    GAAACAGAGT TACAGAAGTA CACTGCTCTA GCTTGAAGCA ACACACTAAT
    GTACCTTGAA GGCTGGTATT AGTTGATCTT GGTTTTGT

    Gene models with high sequence identity

    1. AT3G56510.2 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 2e-57; Score: 220.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SUBFAMILY NOT NAMED 3.5e-70
    HMMPanther FAMILY NOT NAMED 3.5e-70
    HMMPfam RNA recognition motif, RNP-1 0.0000065
    superfamily RNA-binding domain, RBD 0.000000057
    ProfileScan RNA recognition motif, RNP-1 9.542

    See the detailed result >

    AT3G56510.2

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: TATA-binding protein binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR