K21615

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21615

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21615

Determination of introduced cDNA(s)

  • J023058D05 - Rice Full-length cDNAs - Original: J023058D05

    full reading [+] show sequence

    Nucleotide sequence: J023058D05 - full reading 
    TGGGAGAGAA GAAGAAGAAG AAGAAGAATC CATGGCGGCC ACGAGCTCGG 
    AGAAGAAGAC GGCGGCGGAG GTCGTCGCCA TGCTGGATCT GCAGCGCCAC 
    CCCGATGGCG GGTTCATCCT GGAGACCTTC CGCGACCCCT CCATCTCCCT 
    CCCCAAGTCC GCCCTCCCTC CCCGCTGTAA GCTTGGCCAT TTTCATCGGG 
    TTGCTTGATC TCGCGTTGGA TTGTGGATTG CTTCAATTAG AGGTCATTTC 
    CACTTACAGA TAGCTGTAAT CGATGATTTC GGGTCCGGAT ACTGTGCTGA 
    TTATTGCGAT TGGAGATATA TTATAATGTA GTTCAGAAAT CAGTGTGAGT 
    TCATGATTCT ACGGCAATAT GCTCGTCAAG ATCATCCTAG TTGTTTAATT 
    GTTGTGTCTT TTGATCCTAC TTTTTTGAAA TAAACTGGAG TAATTATAAT 
    CTACTGAAGA CACAGAAAAA GAAAAGGACT GTTTTCTTTG GGCACGAAAT 
    TCTGGTAATT AAAAAGTATT AGTAGAATCT GAGGCAGTAG GTGTTCTACA 
    CTCAGAGAGT CAAGGTTCCC CAAACTAGTC AAGAAGTGCA AACTATTGTT 
    ATTTCCTGGC AGTTTTCTTT TGTGTAGAAA ATTCCTAAAT AATGAAGTCT 
    GACTTCTTAT ACTTTTTAGC AAAATCCAGG GGTATTTGGC ATTATATGGC 
    TCATTCTATG TGTTAGTACA ATAATAACAG TAAGAACAAC ATGAATGAGA 
    TTCGAATTCT GTGTATATCC TGCCTACACT GGATTGTTAT AATCGATCAG 
    ATTTTGTAGC TCCTAAACTA GATGATTTAA TTTCTGATAA AAAAGCTTCA 
    TGAGTTAATA AAGGGTCAAA CATTAGTACT CCAAACATTA CTGCTAGGTT 
    CTGAGCTTGC GGCCAGATGT ATGTTCTGGA TCGTGTATAC TCTGGAGTCT 
    TGACATGTCT ACTAACTGTC CATCAATAAA CTTGTGATGA GATAATAATT 
    TCTCGCGCTC CTTGACTGCT TCCTTTCTCT TGTAAAGTAA ATGTTAGCTC 
    TTGTAACTAA GCGTATTTGA CTGCTGATGC GTGCAATTTT TGACTTGGCA 
    AAATTGGCCT AGCTGCATTT TTTCCCCCTG ACCAAGGGGC AACTATCGCT 
    GTCTCTCCTT TTGTGAAGGA TACACAGCAA GAGTCTGGTC AGTAGTATAT 
    CCTGGTTTTT ACATCTAGGA AGACTCAAAA AAGGGCATAT CTGTAACTCA 
    CAGGCCATAG GAGTATTTGT TCAGAAGTAT TATCAACATG ACTTTGATTT 
    GTCGTTACTT TTACATCATT ATATTTGATT AGTGCAAATT TGGTCCTTTG 
    ATGCTATACA CAACTCTTTC TCTTGCTAAC TGTGCTTAGT CAATATTGGG 
    TGCTGAGTCT TTAACTTCTC ATTTATCCTA AAAAAAACAC TTCTAAATTT 
    GGGGTTTTCA CATATCAGAT TAGCACACCA TTGAGCATGA GCCTGACAAA 
    CTTCATTTAC TGTAACACAC AGACCAGAGA TGGTTCATAA TTAACAGACT 
    CAGTCCCATG ATAGTATAAA ATATCTTAGA GCATATTCTT TTTTTCTTTC 
    TTTTGAATTG CAGGCAAAAG CTTTGACCAC TTTTAGAGGT TATTCATCAA 
    TGCATTGTGT GGTGCCGCCC ACTGTTAACT CCCTAGTTAA CCGTCATAAG 
    AGTAGAGTCT GCTTAACATT TTAGATTACC ACATAATGTT AACTCCAATT 
    TCAGTTCCTG TGAGCTACTA TAGATTTATA AATAAAAATA ACACATTATC 
    TCTAATTCTG TCAATGTGTT TCATTCCTTG TAGATAAGGT AGACCGTGCT 
    GTGAGCAATG CCATATATTT CCTGCTACCT GCTGGAGAGA TCGTTAAGTT 
    GCATCGCATC CCTTGTGCTG AGACCTGGCA CTACTACATG GGGGAACCTC 
    TCACGGTCAG CAAATTTTAA CATAAATATC AAATTAACAT AACTTCTTGA 
    CTAACCCCAT TTTTTTTCAG GTATTTGAAG TGCATGACGA TGGACAATTC 
    AAGATGACAG TTGTTGGACC TGATCTACGG CATGGCCAAA AGCCACAATA 
    CACAGTTCCT CCAAATGTTT GGTTTGGCGC CTTCTTGACC TGCGACATCG 
    AGTCCTTCAC CGAAGATGGA AGTGTGTTTG TCAAAACGCC TGGAAGAGAC 
    TCTGAGCTGC ACTACTCTTT CGTCGGTGTA ACCTGTGCTC CAGCATTCCA 
    GATTGAAGAC GACGAAATGG CAACACGGGA GAGCATGAAA GCTTTGGCTC 
    CTAAAGCAGA AGCTTTCATC AACTACCTTG TGCCTTCAGA CTGAGTTTTA 
    TTCCACTCCA AGTAGCTCGC TCTACGTAAT GAACTGTATG TACCAAGCTA 
    CTGATGTTTG CAGGGCAGAA ACCCTGAGGC CTGAAGCTTG CATGTATCAT 
    CACTGACCAG TTAGTAGTAT TTAGTATTGG TTTGGTGACA TAGTTTCTCA 
    CTATTTTTTC GG

    Gene models with high sequence identity

    1. AT1G19130.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like je...
      E-value: 5e-25; Score: 113.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF985 0.00000000003
    Gene3D RmlC-like jelly roll fold 0.00000499999811956429
    Gene3D RmlC-like jelly roll fold 0.000000000000076
    HMMPfam Protein of unknown function DUF985 0.0000000000021

    See the detailed result >

    AT1G19130.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 1465 Blast hits to 1465 proteins in 584 species: Archae - 10; Bacteria - 1038; Metazoa - 19; Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR