K21620

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21620

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21620

Determination of introduced cDNA(s)

  • J013093C04 - Rice Full-length cDNAs - Original: J013093C04

    full reading [+] show sequence

    Nucleotide sequence: J013093C04 - full reading 
    GTCTTCTGAA CTAACCCAAA GATCAGGTCG GAGGCGGAGG CAAACACGAG 
    AAGAAGATGC CGCGGCGGCC TAGCGGCGGC GGCGGCGGCG CTGGTCCCGC 
    GGCGGCCGCG GTGCGCAAGG TCCCCCTGCG GAAGCTTCTG CGTGCGGCGT 
    CGGTGGCGTG CGGCGTGCAG TTCGGGTGGG CGCTGCAGCT CTCCCTGCTG 
    ACCCCCTACG TCCAGGAGCT CGGCATCCCG CACGCCTTCG CCAGCCTCGT 
    CTGGCTCTGC GGCCCCCTCT CCGGCCTCCT CGTCCAGCCC CTCGTCGGCC 
    ACCTCTCCGA CCGCATCGCC CCCGCCGCCG CCCCTTCATC GCCGCCGGCG 
    CCGCTTCCAT CGCTGCCGCA GTTCTCACCG TCGGGTTCTC CGCCGACCTC 
    GGCCGAATCT TCGGCGATTC CATCACCCCG GGCTCCACCC GCCTCGGCGC 
    CATCATCGTC TACCTCGTCG GCTTCTGGCT CCTCGACGTC GGCAACAACG 
    CTACACAGGG ACCCTGCAGG GCCTTCCTCG CCGACCTCAC CGAGAATGAC 
    CCAAGGAGGA CTCGGATAGC TAATGCTTAC TTCTCATTGT TCATGGCCCT 
    GGGAAACATA CTTGGATATG CCACTGGAGC ATACAGTGGC TGGTACAAGA 
    TATTCCCGTT CACCGTTACT CCATCATGTA GCATCAGCTG TGCCAACCTC 
    AAGTCTGCCT TTCTACTTGA TATTATCATT TTGGTGGTCA CTACATGCAT 
    CACTGTAGCA TCAGTGCAAG AGCCTCAATC CTTTGGAAGT GATGAAGCAG 
    ATCACCCTAG CACAGAACAG GAAGCTTTCC TCTGGGAACT TTTTGGATCA 
    TTCCGGTACT TTACATTACC GGTTTGGATG GTTTTGATTG TTACTGCCCT 
    CACATGGATT GGATGGTTTC CATTTATCCT CTTTGATACC GATTGGATGG 
    GTCGAGAGAT CTATCGTGGA AGTCCAGATG ATCCAAGTAT AACTCAGAGC 
    TATCATGATG GTGTGAGAAT GGGTTCTTTT GGTCTGATGC TGAACTCGGT 
    CCTTCTTGGA TTCACTTCTA TTGTACTAGA GAAGTTATGT CGGAAGTGGG 
    GAGCTGGACT GGTGTGGGGT GTCTCCAATA TCCTAATGGC ATTGTGCTTT 
    GTGGCAATGC TTGTAATAAC ATATGTGGCA AAGAATATGG ATTATCCACC 
    TAGTGGAGTA CCACCAACCG GCATTGTCAT TGCTTCCCTG GTAGTTTTTA 
    CAATTTTAGG AGCGCCCCTG GCGATCACGT ACAGTATACC ATATGCAATG 
    GCTGCTAGTC GGGTTGAAAA TCTGGGACTT GGCCAAGGTC TAGCAATGGG 
    CATTCTTAAT TTGGCTATTG TCATACCACA GGTTATTGTG TCACTGGGTA 
    GCGGGCCCTG GGACCAACTG TTTGGTGGTG GCAATGCACC AGCCTTTGCA 
    GTGGCTGCTG CTGCATCTTT TATCGGTGGG CTGGTGGCTA TTCTGGGCCT 
    TCCACGAGCC CGCATTGCAT CAAGGAGGAG AGGTCACCGA TAAGAATATT 
    GCTACATATA AATTGTCGGC CATTCTTTGC AATTCGACTC ATAAGAGGCA 
    CTCGGAACGC TATGCAGTGC ATGGGGGAAT TGTATATTAT CTCCGAATCA 
    AGAAGGGGAT AATGCTTGCT TTCTCCATGA GCTATTTTTG CCTTTTTCAT 
    GCCGGATCAT CATATGCTGT CGTACATTGG ATGATCTTAT GCTGTTGTAC 
    ATTGGATGTT GGTCATTTGT AGAGATACTA GTGAATAAAA GTTGCAGGAG 
    TTGGTTCACT CGAGAAAATT CTGGTCAGTA TGTCGTCCAT CTGCTGCACG 
    ACAGCAGTTA GGAGCCGAAT AGCATGTCCA TGGGTTTTCA TCAAATGTTG 
    TATCATCATT TGTTTTTTGA TACGTTCAGA CGGCTTCAGT GCTGTGTGAA 
    TATATATGTA TGGAATATAT CGAGAAAATG TTGTTGG

    Gene models with high sequence identity

    1. AT1G09960.1 [+] show detail - sucrose transporter 4
      E-value: 5e-154; Score: 119.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Major facilitator superfamily, general substrate transporter 3.1e-16
    superfamily Major facilitator superfamily, general substrate transporter 1.1e-07
    HMMTigr Sucrose/H+ symporter, plant 1.9e-191
    HMMPanther SUCROSE TRANSPORT 5.3e-138
    HMMPanther SUGAR TRANSPORTER 5.3e-138
    HMMPanther SUCROSE TRANSPORT 4.2e-36
    HMMPanther SUGAR TRANSPORTER 4.2e-36

    See the detailed result >

    AT1G09960.1

    Model type
    Protein coding
    Short Description
    sucrose transporter 4
    Curator Summary
    low affinity (10mM) sucrose transporter in sieve elements (phloem)
    Computational Description
    sucrose transporter 4 (SUT4); FUNCTIONS IN: sucrose transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: sucrose transport, transmembrane transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 2 (TAIR:AT1G22710.1); Has 2568 Blast hits to 2441 proteins in 632 species: Archae - 30; Bacteria - 1104; Metazoa - 451; Fungi - 193; Plants - 403; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR