K21622

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21622

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21622

Determination of introduced cDNA(s)

  • J013101K13 - Rice Full-length cDNAs - Original: J013101K13

    full reading [+] show sequence

    Nucleotide sequence: J013101K13 - full reading
    GACCATCGGT CAGTCGCACA GATAACACCG TAGTATCAGA CAAGACCTCA 
    TCTCAGTATC CAGCCGAGAG GAAATCAAAG GAAGAGAAGG GGAAAAGCAA
    TGGCGGGCAA GGACGACGAC GTGAAGGTGC TCGGCCTGGT GATGAGCCCC
    TTCGCGATCC GCGTATGCAT CGCGCTCAAG TTGAAGGGCG TGAGCTACGA
    GTACATCGAG GAGGACCTCG CCAACAAGAG CGAGCTCCTC CTCAGCTCCA
    ACCCGGTGCA CAAGAAGATC CCCGTCCTCA TCCATGGCGG CAAGCCCGTC
    TCCGAGTCGC TCGTCATCGT GCAGTACGTC GACGAGGCCT GGGCGCCCTC
    CCCCACGTCG CCCTCCATCC TCCCCGCCGA CCCCTACGAC CGCGCCGTCG
    CCCGCTTCTG GGCCGCCTAC GTCGACGACA AGATGGTCCC TGGTATGGTT
    GGCGTTTTGA GGGCGGCGAC GGAGGAGGAG AGGGCGGCGA AGGCCGACGA
    GACGCTGGCG GCGATGGCGC AGCTGGAGAA GGCGTTCGCC GAGGTGGCCG
    CGAAGAACGG GAAGCCCTTC TTCGGCGGCG ACACCGTCGG GTACGTCGAC
    CTCGCGCTCG GTTGCAACCT GCACTTTCTC GAAGCGATCC GCAGGTTGCA
    CGGCGTGGCG TTGGTCGACG CCGGCAAGAC CCCGCTCCTG GCGGCGTGGG
    CGGAGCGGTT CGTGGAGGTC GAGGCGGCCA AGGGGGTGGT GCCGGACGCG
    GACGACGCCG TGGAGTTCGC CAGGAAAGTC CAGGCTCGTG TAGCAGCTGC
    TGCTGCTTCC ACCGCTGCCA AGTGAGTGGA AAATCGTTTT CGATTGGATC
    ATTGGGTTTC TTGTAATAAA GAAAAAATCG TGTTATTACA GTGCCATTTT
    CAAGTCATGG TTAGTTTATT TGTGGGGTTA TTAATGTGTA AAGTCTGGAC
    ATGTATGCGT GTTATGTTCT CTGGTTCATC GATCATAAGC AGCTATACAG
    ACATACAGTG CTAGTGCTAT TGCC

    Gene models with high sequence identity

    1. AT1G10370.1 [+] show detail - Glutathione S-transferase family protein
      E-value: 3e-52; Score: 202.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Thioredoxin fold 5e-26
    Gene3D Glutathione S-transferase, C-terminal-like 5.8e-46
    HMMPfam Glutathione S-transferase, N-terminal 4.9e-13
    HMMPfam Glutathione S-transferase, C-terminal 1e-07
    FPrintScan PRICHEXTENSN 1.4e-09
    FPrintScan PRICHEXTENSN 1.4e-09
    FPrintScan PRICHEXTENSN 1.4e-09
    FPrintScan PRICHEXTENSN 1.4e-09
    superfamily Glutathione S-transferase, C-terminal-like 2e-40
    superfamily Thioredoxin-like fold 2.1e-21
    HMMPanther GLUTATHIONE S-TRANSFERASE 1.5e-112
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 1.5e-112
    ProfileScan Glutathione S-transferase, N-terminal 19.404
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 19.75

    See the detailed result >

    AT1G10370.1

    Model type
    Protein coding
    Short Description
    Glutathione S-transferase family protein
    Computational Description
    EARLY-RESPONSIVE TO DEHYDRATION 9 (ERD9); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to water deprivation, response to karrikin, toxin catabolic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 18 (TAIR:AT1G10360.1); Has 6064 Blast hits to 6029 proteins in 1096 species: Archae - 0; Bacteria - 2896; Metazoa - 397; Fungi - 130; Plants - 2065; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR