K21649

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21649

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: K21649

Determination of introduced cDNA(s)

  • J013153E04 - Rice Full-length cDNAs - Original: J013153E04

    full reading [+] show sequence

    Nucleotide sequence: J013153E04 - full reading 
    GAATTTGATT TGTGATCTTC CGATCTGCTT CGCGAATGGC AAACTACTAG 
    TACTCCACTT CAGTACAACC AATCGACGGT TCGGCCATAA ATGCCACTGA 
    CTTCAGCTGT CCACCATCCA GCCTCCCAAG GTTCTGGATC ACATCGTGCC 
    ACCGTGCCGG CTCGGCTCAC GCGTGGATGG GGAAGACGGC GACCGAAGGG 
    GACAAGGAGG CGGGGCGGGG CGGCGGCGGC GGCGGCGGCG CCCGCCGCCC 
    CGTGGTGCTG GTGACGGGCT GCTCGGAGGG CGGGATCGGG CACGCGATGG 
    CGCGGGCGTT CGCGGCGGCC GGGTGCGCCG TCGTGGCCAC GGCGCGGTCG 
    CGCGCCTCCA TGCGCGGGCT GGAGGGGGAC CCGCGGTACC TGCTGCTGGA 
    GCTCGACGTG CGCTCCGACG AGAGCGCGCG CGCTGCCGTG GCCGACGCCG 
    TCCGGGAGCT CGGCCGCGTC GACGTGCTCG TCAACAACGC CGGGGTCCAC 
    CTCGTCGCGC CGCTCGCCGA GGTGCCCATG GAAGAGTTCC AGCAGGTGTT 
    CGACACCAAT GTCTATGGAG CAATGAGGCT GATTCATGCT GTTATTCCCC 
    AAATGATAGA AAGGGAACAA GGTACAATAG TGAATGTTGG AAGTATAACA 
    GCTTTGGCTC CTGGACCATG GGCTGGTGTA TATTCAGCAT CAAAAGCCGC 
    TCTTCATGCA TTGAGCGATA CGCTAAGACT GGAGCTAAAA AGTTTCGGAA 
    TTAATGTTAT GATTGTTGCA CCTGGAGGGA CAAAGTCGAA TCTGGGAAGT 
    AACTCTACAT CCAAGTATGT TCAAATACGT GACTGGAAGT ACTACAAAAA 
    ATTCGAGGAA TCCCTCAGAG CCAGGACTGA TGCTTCCCAG GGTCCTGGTT 
    CTACTCCAGC AGAAGACCTC GCAAAAAGGG TTGTTGCTTT GGTTCTTAAG 
    AAGAATCCTC CAGCCTGGTT TGCTTACGGC CAGTTCAGTG CTATTCTAAG 
    CTTGTTGTAC TATGCACCAC TATGGTTTAG AGATTACTTC TATAAGATTG 
    TCATGAAATG CTAGAACTTC TGATGTCAGT AAGTTCAAAG GACAAAGAGG 
    TTGCCACTCA GATAACCCGC AATACATACT TGCATACAGT TTTACAGGGA 
    CCATTCATTC AAGCGAAAAG GCCCCTCCCA GTGTATGCCA TCTTTTTTCA 
    CCTGTAATAA TAGCGGTGCT AGTTTGTTCA TGTAGTGCCA AAGGATGGCA 
    ATCTGAAATA TGTGGCCTGA AGAAACTGGT TTCCTTGC

    Gene models with high sequence identity

    1. AT5G10050.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 2e-76; Score: 283.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Glucose/ribitol dehydrogenase 2.1e-21
    FPrintScan Glucose/ribitol dehydrogenase 2.1e-21
    FPrintScan Glucose/ribitol dehydrogenase 2.1e-21
    FPrintScan Glucose/ribitol dehydrogenase 2.1e-21
    FPrintScan Glucose/ribitol dehydrogenase 2.1e-21
    FPrintScan Short-chain dehydrogenase/reductase SDR 0.0000000000017
    FPrintScan Short-chain dehydrogenase/reductase SDR 0.0000000000017
    FPrintScan Short-chain dehydrogenase/reductase SDR 0.0000000000017
    HMMPanther SHORT-CHAIN DEHYDROGENASE-RELATED 1.7e-84
    HMMPanther Short-chain dehydrogenase/reductase SDR 1.7e-84
    Gene3D NAD(P)-binding domain 8.1e-62
    superfamily NAD(P)-binding domain 7e-66
    HMMPfam Short-chain dehydrogenase/reductase SDR 1e-30
    HMMSmart Polyketide synthase/Fatty acid synthase, KR 0.0067
    PatternScan Short-chain dehydrogenase/reductase, conserved site 0

    See the detailed result >

    AT5G10050.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G65205.1); Has 119739 Blast hits to 119523 proteins in 3734 species: Archae - 959; Bacteria - 78106; Metazoa - 7703; Fungi - 6506; Plants - 2887; Viruses - 2; Other Eukaryotes - 23576 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR