K21715

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21715

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Original: K21715

Determination of introduced cDNA(s)

  • J023102D08 - Rice Full-length cDNAs - Original: J023102D08

    full reading [+] show sequence

    Nucleotide sequence: J023102D08 - full reading
    GATTCACGGG AGGTTGCCGT GTCGGGCGCG CGCGGGTGAT TGATTTCGCC 
    GGCGGCGAGG GGAGGGAGGG AGGCAAAAGA GATGGACCGG GCGGCGCTGA
    CGGTGGGGCC GGGGATGGAC ATGCCGATAA TGCACGACGG CGACCGGTAC
    GAGCTGGTGC GGGACATCGG CTCCGGCAAC TTCGGCGTCG CGCGCCTCAT
    GCGCAGCCGC GCCGACGGCC AGCTCGTCGC CGTCAAGTAC ATCGAGCGCG
    GCGACAAGAT CGACGAGAAC GTGCAGCGGG AGATCATCAA CCACCGCTCG
    CTGCGCCACC CCAACATCAT CCGCTTCAAG GAGGTCATCC TCACCCCCAC
    CCACCTCGCC ATCGTCATGG AGTACGCCTC CGGCGGCGAG CTCTTCGAGC
    GCACCTGCAA CGCCGGCAGG TTCAGCGAGG ACGAGGCACG GTTCTTTTTC
    CAGCAACTGA TTTCAGGAGT CAGCTATTGC CATTCCATGC AAGTATGCCA
    TCGTGACCTG AAGCTGGAGA ACACCCTGCT CGACGGCAGC ACGGCGCCTC
    GCCTCAAGAT ATGCGACTTT GGCTATTCAA AGTCGTCTGT TCTTCATTCG
    CAACCAAAAT CTACTGTTGG AACTCCGGCA TACATCGCTC CTGAGGTTCT
    GCTGAAGAAG GAATATGATG GAAAGATTGC TGATGTGTGG TCGTGTGGAG
    TAACCCTCTA CGTAATGCTG GTTGGTGCAT ATCCTTTTGA GGATCCAGAT
    GAGCCTAAGA ATTTCAGGAA GACAATTCAG AGAATATTGG GTGTGCAGTA
    CTCTATTCCA GATTATGTCC ACATATCTCC AGAGTGCCGA GATCTTATTG
    CGAGGATTTT TGTGGCCAAC CCAGCCACTA GAATCTCTAT CCCCGAGATC
    AGAAATCATC CATGGTTCTT GAAGAATCTC CCAGCTGACC TTATGGATGA
    TAGCAAGATG AGCAGCCAGT ACGAGGAGCC CGAACAGCCA ATGCAGAGCA
    TGGATGAGAT CATGCAGATA CTGGCAGAGG CGACCATACC AGCAGCTGGG
    TCTGGTGGAA TCAACCAGTT CTTGAATGAT GGCCTTGACC TCGATGATGA
    CATGGAGGAC CTTGATTCAG ACCCCGATCT TGACGTGGAA AGCAGTGGGG
    AGATAGTATA CGCTATGTGA TGCTGTGAAT TCTAGCAAGC AGACAGGCAG
    ATTGCTTGTC AGTTGCCCGC GAATTGGTTT GTTGTATTAC AGTCACAGAT
    GACAAAGATG GCCAAGAAAC TGGGAAGTGG ATACATGTGT CAAGAGTACA
    TCACAAAAAA GTTCGGTTGC CTATGCTGTT TATTATGCCT GATGATCCCT
    GTTGTCTCCT GTTTTGTCGC CGTTGATTTG TGTATTGGAG TGTCCTAGAT
    CTCGTTTTGA GAACTGTTTG GAACCTTGTC TTTGCTCCCC TTAACTGAGG
    GAAAGCGATG TAGTGGTAGT AGTAGTAGTA GTAGCAGCGT GAAGACTGAA
    TAAGAGATGC CCCCAGTAAG CTCAGTACAC GAACTTGTTT CCATTTTCAA
    AGCACCATCT GCACTGCACG TCATTAATTT TATTTATGTT ACTTC

    Gene models with high sequence identity

    1. AT4G33950.1 [+] show detail - Protein kinase superfamily protein
      E-value: 7e-166; Score: 580.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 6.5e-98
    HMMSmart Tyrosine-protein kinase, catalytic domain 3e-12
    Gene3D no description 1.1e-60
    superfamily Protein kinase-like domain 1e-82
    HMMPfam Serine/threonine-protein kinase-like domain 1e-70
    HMMPanther Serine/threonine-protein kinase-like, plant 2.4e-200
    HMMPanther Calcium/calmodulin-dependent protein kinase-like 2.4e-200
    ProfileScan Protein kinase, catalytic domain 48.357

    See the detailed result >

    AT4G33950.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Curator Summary
    Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Mutations disrupted ABA induction of stomatal closure as well as ABA inhibition of light-induced stomatal opening. However, regulation of stomatal opening/closing by light or CO(2) is not affected in these mutants. May act in the interval between ABA perception and reactive oxygen species production in the ABA signalling network.
    Computational Description
    OPEN STOMATA 1 (OST1); FUNCTIONS IN: calcium-dependent protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: in 14 processes; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like, plant (InterPro:IPR015740); BEST Arabidopsis thaliana protein match is: sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (TAIR:AT5G66880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR