K21716

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21716

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21716

Determination of introduced cDNA(s)

  • J033112N10 - Rice Full-length cDNAs - Original: J033112N10

    full reading [+] show sequence

    Nucleotide sequence: J033112N10 - full reading 
    ATATATATAT CACCACACAC TCCCAAGTCC CAACAACACC TACTTCTCAC 
    ACATCCATGC TTCTGCCTCT CCAATCCATC CTCTGCTACT TTCTCCAACA 
    TTTCCATGTC TCCACTCCAC ACCCATCTCG GGTTCTTCCT CCTCCTCCTC 
    CTCTTCTCCT TGCACAATCC ATCATGCTCC GCCGCGGCGA ATGATACCCT 
    CGCGGTGGGG CAGGTGCTCG CCGTCGGGGA GAAGCTCGTC TCGAGGAACG 
    GCAAGTTCGC GCTCGGCTTC TACAAGCCGG CACTCCCTGA AGGCATTGCA 
    AGTAAGTATG GCAACATCAC CTCTCCTGGA TGGTACCTTG CCATATGGTT 
    CAACAAGATC CCGGTTTGTA CCACCGTGTG GGTTGCTAAT AGGGAGAGGC 
    CAATCACTGA TCTAGAGATC AAGCTAACAC AGCTGAAATT CTCACAAAAT 
    GGCAGTAGCC TTGCCATCAT CATAAACCGT GCTACTGAAT ACACAGTATG 
    GTCCAGACAA ATTGCCAATA GGACAGCACA AGCTAAAACC AGCATGAACA 
    CTAGTGCAAT TCTCTTGGAC AGTGGAAATC TTGTCATAGA AAGCATCCCT 
    GATGTTTATC TGTGGCAGAG CTTTGATGAA CCGACGGATC TTGCGCTTCC 
    TGGCGCAAAG TTTGGGTGGA ATAAGGTCAC CAGGTTGCAT CGTACTGGTA 
    TATCAAAGAA AAACCTTATT GATCCGGGTC TCGGCCCATA TTCCGTTCAA 
    CTGAACGAGA GGGGCATTAT CCTGTGGCGT CGAGATCCTT ACATGGAGTA 
    TTGGACCTGG TCATCTGTCC AATTGACAAA TATGCTCATA CCATTACTCA 
    ATTCGCTACT AGAAATGAAT GCACAGACCA AAGGTTTCCT TACCCCAAAT 
    TATACTAACA ACAACGAAGA GGAATACTTC ATGTACCATT CATCAGATGA 
    ATCCTCTTCC TCATTTGTCT CAATAGACAT GTCTGGCCAG CTCAAGTTGA 
    GCATTTGGTC ACAAGCTAAT CAGTCTTGGC AAGAAGTATA TGCACAGCCT 
    CCTGATCCAT GCACTCCATT TGCAACCTGC GGACCTTTTA GCGTATGCAA 
    TGGCAATTCA GATTTATTTT GTGATTGTAT GGAGAGCTTC TCTCAGAAGT 
    CACCTCAAGA TTGGGAGCTC AAGGATCGAA CCGCAGGTTG CTTCAGAAAT 
    ACGCCATTAG ATTGCCCTAG TAACAAGAGC TCGACAGACA TGTTCCACAC 
    AATAACTCGG GTCGCATTGC CAGCTAACCC CGAAAAAATA GAAGATGCTA 
    CCACTCAAAG CAAATGTGCC GAATCTTGTC TCAGTAACTG CTCCTGCAAT 
    GCTTATGCCT ACAAAGATAG CACATGCTTT GTCTGGCATA GTGAACTCCT 
    TAATGTAAAG CTACATGACA GCATTGAAAG TCTTTCTGAA GATACTCTTT 
    ACCTTCGCCT AGCTGCCAAA GATATGCCAG CTACGACCAA AAACAAACAA 
    AAACCAGTTG TTGTGGCTGT TACCGCTGCA AGCATTGCCG GTTTTGGGTT 
    ACTAATGCTC ATGCTATTCT TCTTGATTTG GCGGAACAAA TTCAAGTGTT 
    GTGGTGTAAC ATTACACCAC AACCAAGGCA ACAGTGGAAT AATAGCCTTC 
    AGATACACTG ATTTAAGTCA TGCTACCAAA AATTTCTCAG AAAAGTTGGG 
    GTCAGGTGGT TTTGGTTCTG TGTTCAAGGG AGTATTAAGA GACTCAACTA 
    CTATTGCGGT GAAAAGGCTC GATGGTTCAC ATCAGGGAGA AAAGCAATTC 
    AGGGCTGAGA CTTTGGGATG GCGGCATTTG TGGGAAGGGA TTTTAGTCGG 
    GTTCTAACTA CTTTCAGGGG AACTAAAGGG TATCTTGCCC CAGAGTGGCT 
    TAGCGGAGTC GCTATTACTC CAAAAGTTGA TGTTTACAGT TTTGGTATGG 
    TACTGCTAGA AATCATATCA GGAAGAAGGA ATTTATCTGA AGCATACACA 
    AGCAACCATT ATCATTTTGA TTATTTTCCC GTGCAAGCCA TCAGCAAACT 
    TCATGAGGGA AGTGTGCAGA ATTTGCTTGA TCCAGAATTA CATGGTGATT 
    TCAATTTGGA AGAGGCTGAA AGAGTTTGTA AAGTTGCATG TTGGTGCATT 
    CAAGAAGATG AAATTGATAG GCCAACAATG GGTGAAGTGG TTCGCTTTCT 
    TGAGGGTCTA CAGGAGGTTG ACATGCCCCC CATGCCAAGA CTACTTGCAG 
    CCATAACCGA AAGGTCTCAT ATATAGTTTC AGTGTTGTAA TATTTCATAA 
    ATACTTTGTA TTCAATGTAA TCAGTCTTTT GTTTGAGCAA ATTGAAAGTT 
    CCAATGTAAT AATCTGGCAA TTGCTT

    Gene models with high sequence identity

    1. AT2G19130.1 [+] show detail - S-locus lectin protein kinase family protein
      E-value: 8e-63; Score: 239.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR23258:SF442 2.50000909916183e-83
    HMMPanther PTHR23258 2.50000909916183e-83
    Gene3D G3DSA:1.10.510.10 1.70000295590054e-22
    superfamily Protein kinase-like domain 2.800005042611e-25
    HMMPfam Serine/threonine-protein kinase-like domain 0.0000000000011
    ProfileScan Protein kinase, catalytic domain 0
    superfamily Curculin-like (mannose-binding) lectin 4e-19
    superfamily Protein kinase-like domain 0.00000000018
    PatternScan Protein kinase, ATP binding site 0
    Gene3D no description 0.00000054
    ProfileScan Curculin-like (mannose-binding) lectin 12.735
    ProfileScan Apple-like 10.621
    HMMSmart Curculin-like (mannose-binding) lectin 1.2e-17
    HMMSmart Apple-like 0.00003
    HMMPanther S-RECEPTOR KINASE 1.3e-47
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.3e-47
    HMMPfam Curculin-like (mannose-binding) lectin 9.5e-26
    HMMPfam S-locus glycoprotein 6.2e-19
    HMMPfam PAN-2 domain 2.7e-17

    See the detailed result >

    AT2G19130.1

    Model type
    Protein coding
    Short Description
    S-locus lectin protein kinase family protein
    Computational Description
    S-locus lectin protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Apple-like (InterPro:IPR003609), PAN-1 domain (InterPro:IPR003014), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase 4 (TAIR:AT4G00340.1); Has 116366 Blast hits to 114909 proteins in 4332 species: Archae - 99; Bacteria - 12770; Metazoa - 42761; Fungi - 9470; Plants - 34242; Viruses - 402; Other Eukaryotes - 16622 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR